Click here to switch to the map view.

The map label for this gene is fmdA [H]

Identifier: 110834839

GI number: 110834839

Start: 2255969

End: 2257198

Strand: Reverse

Name: fmdA [H]

Synonym: ABO_1978

Alternate gene names: 110834839

Gene position: 2257198-2255969 (Counterclockwise)

Preceding gene: 110834840

Following gene: 110834838

Centisome position: 72.34

GC content: 48.54

Gene sequence:

>1230_bases
ATGGCTGAAACGATTATCAAGATTGACCTGAAACAATCGCCTTACGAAAACGAAAACGTTCATAATCGTTGGCACCCGGA
TATCCCCATGGCGAAAATGGTGAAGCCTGGTGATGATTTTATCTTGGAATGTCATGACTGGACGGGTGGGCAGATCGAGA
ATAACGATAGTGCTGACGATGTTCGTGATGTCGACTTGACTCAGGTGCACTTTCTAACCGGACCTGTGGGTGTCGAAGGC
GCCGAGCCCGGTGATCTTCTGGTGGTGGATATCCTTGATATCGGCACTTTTGATGAAAGCCAATGGGGCTTTAATGGTTT
CTTTTCCAAGCAAAATGGCGGTGGCTTTCTTACCGAACATTTTCCTGAAGCTCAGAAATCCATCTGGGATTTCAATGGTA
TGTTCACCAAGTCCCGCCATATTCCCAACGTGGAGTTTGCCGGCCTGATTCACCCGGGTCTTATAGGTTGTTTGCCGTCG
AAGGAAATGCTTGAAGAGTGGAACACCCGGGAAAAAGCACTTTACGATACCGAGCCTGATCGTGTTCCTGGGTTGGCTAA
CTTACCTTATGCTGATACGGCGCACATGGGTAAGTTAAGCGGTGACGCGAAAGCCCAAGCTGCTGCTGAAGGCGCCCGTA
CCGTACCGCCCCGTGAGCATGGTGGTAACTGTGACATTAAAGATTTGTCGAGGGGCTCGCAGGTTTATTTCCCCGTTTAT
GTGAAGGATGCGGGGCTGTCCGTGGGGGATCTGCATTTTAGCCAGGGTGATGGTGAGATTACGTTCTGTGGAGCCATTGA
GATGGCTGGCTGGATCCATTTACGGGTGAACATCATTAAAGGAGGTATGGAAAAATACGGAATTAAGAATCCTATCTTTA
AGCCCAGCCCTATGGCGCCCAAGTATGACGATTACTTAATATTTGAAGGTATCTCTGTAGATGAACAAGGCAAGCAGCAT
TATTTAGACGTGCATGTGGCGTATCGTCAGGCGTGCCTCAATGCGATTGAGTACCTAAAGAAATTCGGTTATACGGGTGC
TCAAGCCTATGCTTTGCTCGGTTGTGCTCCTGTCCAGGGACATATTAGTGGCGTAGTGGATGTGCCCAATGCCTGTGCCA
CTCTTTGGTTGCCAACGGATATTTTCGACTTTGATATTAAGCCGGGTATGGATGGTCCACAGCATAGTGTGGCCGGCAGT
GTTGACATCCCATTATCGAAAGATAAGTAA

Upstream 100 bases:

>100_bases
TGTGCTGTGCTATTAACTCATGGTTGTCCTTGGAGGTTTCATTAATAGTGATCGTGTTGATGCCCACTCGACCTAAATGA
TTCGCTAAGGAGCTTTGATT

Downstream 100 bases:

>100_bases
TTTATACAGGAGTGATCATGCCCCTTTATGACTATAAATGTGTTGAGCACGGCTTGTTCCATGACCTCGTTCCCATGCAG
GCTTCCGGTGATTGCGCCAT

Product: formamidase

Products: NA

Alternate protein names: Formamide amidohydrolase [H]

Number of amino acids: Translated: 409; Mature: 408

Protein sequence:

>409_residues
MAETIIKIDLKQSPYENENVHNRWHPDIPMAKMVKPGDDFILECHDWTGGQIENNDSADDVRDVDLTQVHFLTGPVGVEG
AEPGDLLVVDILDIGTFDESQWGFNGFFSKQNGGGFLTEHFPEAQKSIWDFNGMFTKSRHIPNVEFAGLIHPGLIGCLPS
KEMLEEWNTREKALYDTEPDRVPGLANLPYADTAHMGKLSGDAKAQAAAEGARTVPPREHGGNCDIKDLSRGSQVYFPVY
VKDAGLSVGDLHFSQGDGEITFCGAIEMAGWIHLRVNIIKGGMEKYGIKNPIFKPSPMAPKYDDYLIFEGISVDEQGKQH
YLDVHVAYRQACLNAIEYLKKFGYTGAQAYALLGCAPVQGHISGVVDVPNACATLWLPTDIFDFDIKPGMDGPQHSVAGS
VDIPLSKDK

Sequences:

>Translated_409_residues
MAETIIKIDLKQSPYENENVHNRWHPDIPMAKMVKPGDDFILECHDWTGGQIENNDSADDVRDVDLTQVHFLTGPVGVEG
AEPGDLLVVDILDIGTFDESQWGFNGFFSKQNGGGFLTEHFPEAQKSIWDFNGMFTKSRHIPNVEFAGLIHPGLIGCLPS
KEMLEEWNTREKALYDTEPDRVPGLANLPYADTAHMGKLSGDAKAQAAAEGARTVPPREHGGNCDIKDLSRGSQVYFPVY
VKDAGLSVGDLHFSQGDGEITFCGAIEMAGWIHLRVNIIKGGMEKYGIKNPIFKPSPMAPKYDDYLIFEGISVDEQGKQH
YLDVHVAYRQACLNAIEYLKKFGYTGAQAYALLGCAPVQGHISGVVDVPNACATLWLPTDIFDFDIKPGMDGPQHSVAGS
VDIPLSKDK
>Mature_408_residues
AETIIKIDLKQSPYENENVHNRWHPDIPMAKMVKPGDDFILECHDWTGGQIENNDSADDVRDVDLTQVHFLTGPVGVEGA
EPGDLLVVDILDIGTFDESQWGFNGFFSKQNGGGFLTEHFPEAQKSIWDFNGMFTKSRHIPNVEFAGLIHPGLIGCLPSK
EMLEEWNTREKALYDTEPDRVPGLANLPYADTAHMGKLSGDAKAQAAAEGARTVPPREHGGNCDIKDLSRGSQVYFPVYV
KDAGLSVGDLHFSQGDGEITFCGAIEMAGWIHLRVNIIKGGMEKYGIKNPIFKPSPMAPKYDDYLIFEGISVDEQGKQHY
LDVHVAYRQACLNAIEYLKKFGYTGAQAYALLGCAPVQGHISGVVDVPNACATLWLPTDIFDFDIKPGMDGPQHSVAGSV
DIPLSKDK

Specific function: Hydrolyzes formamide with the production of ammonia which can be used as a source of nitrogen for growth. Also acts, more slowly, on acetamide, propanamide and butanamide [H]

COG id: COG2421

COG function: function code C; Predicted acetamidase/formamidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acetamidase/formamidase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004304 [H]

Pfam domain/function: PF03069 FmdA_AmdA [H]

EC number: =3.5.1.49 [H]

Molecular weight: Translated: 44952; Mature: 44821

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAETIIKIDLKQSPYENENVHNRWHPDIPMAKMVKPGDDFILECHDWTGGQIENNDSADD
CCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEEECCCCCEECCCCCCCC
VRDVDLTQVHFLTGPVGVEGAEPGDLLVVDILDIGTFDESQWGFNGFFSKQNGGGFLTEH
CCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHH
FPEAQKSIWDFNGMFTKSRHIPNVEFAGLIHPGLIGCLPSKEMLEEWNTREKALYDTEPD
CCHHHHHHHCCCCEEECCCCCCCCEEECEECCCCEECCCCHHHHHHCCCHHCEECCCCCC
RVPGLANLPYADTAHMGKLSGDAKAQAAAEGARTVPPREHGGNCDIKDLSRGSQVYFPVY
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEE
VKDAGLSVGDLHFSQGDGEITFCGAIEMAGWIHLRVNIIKGGMEKYGIKNPIFKPSPMAP
EECCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEEEECCHHHCCCCCCCCCCCCCCC
KYDDYLIFEGISVDEQGKQHYLDVHVAYRQACLNAIEYLKKFGYTGAQAYALLGCAPVQG
CCCCEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
HISGVVDVPNACATLWLPTDIFDFDIKPGMDGPQHSVAGSVDIPLSKDK
CCCEEEECCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCEECCCCCCC
>Mature Secondary Structure 
AETIIKIDLKQSPYENENVHNRWHPDIPMAKMVKPGDDFILECHDWTGGQIENNDSADD
CCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEEECCCCCEECCCCCCCC
VRDVDLTQVHFLTGPVGVEGAEPGDLLVVDILDIGTFDESQWGFNGFFSKQNGGGFLTEH
CCCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEECCCCCCCHHHH
FPEAQKSIWDFNGMFTKSRHIPNVEFAGLIHPGLIGCLPSKEMLEEWNTREKALYDTEPD
CCHHHHHHHCCCCEEECCCCCCCCEEECEECCCCEECCCCHHHHHHCCCHHCEECCCCCC
RVPGLANLPYADTAHMGKLSGDAKAQAAAEGARTVPPREHGGNCDIKDLSRGSQVYFPVY
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEE
VKDAGLSVGDLHFSQGDGEITFCGAIEMAGWIHLRVNIIKGGMEKYGIKNPIFKPSPMAP
EECCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEEEEEECCHHHCCCCCCCCCCCCCCC
KYDDYLIFEGISVDEQGKQHYLDVHVAYRQACLNAIEYLKKFGYTGAQAYALLGCAPVQG
CCCCEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
HISGVVDVPNACATLWLPTDIFDFDIKPGMDGPQHSVAGSVDIPLSKDK
CCCEEEECCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8841393 [H]