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The map label for this gene is rlpA [C]

Identifier: 110834819

GI number: 110834819

Start: 2238727

End: 2239656

Strand: Direct

Name: rlpA [C]

Synonym: ABO_1958

Alternate gene names: 110834819

Gene position: 2238727-2239656 (Clockwise)

Preceding gene: 110834818

Following gene: 110834820

Centisome position: 71.75

GC content: 57.63

Gene sequence:

>930_bases
ATGAACCGTTTGGCTTGCGCCGTACTGACCTCTGCCTTTCTCGGCGCCTGTGCCACAACGCCAGGGCCCAATGATGGCAA
TGACGGCCCAGGTGCCAGCAACGGAGCTCCCGGCTCCGACCGTTATAGCCTGCATCAGGATACCGCCCCTGAAGAGCGTA
GAGATATCTCACAGCTGCCGGAACCGGTTCCCACAAATGAACCACGCAGTCGCTATGGCAACCCACAATCCTACAGCGTG
TGGGGCAAAACCTATCAAGTACTCCCCCAAGCGGAGGGTTACGTAGCAGAAGGAAACGCGTCTTGGTATGGCCAGAAATT
TCATGGTCATCGCACCTCCAGCGGCGAATCTTTCGATATGTATCAGTTCACTGCCGCCCATCGCAGCCTGCCACTGCCCA
CTTACGCCCGGGTTACCAATCTGGATAATGGTAAGAGCCTGGTGGTACGGGTGAACGACAGAGGCCCTTTCCACGAAGAT
CGCATCATTGATCTCTCTTGGGCTGCCGCAGTACGCCTAGGCATAGAACAAGCCGGCACCGGACGTGTTCGAGTTGAGGC
CATCACGGGCCAACAGTCACAATCCCAAGAGGCCAACAGCACCGTCCCCACAGCCGTACGCGCCGCCCTGGATAGCCCTC
CGCCTTCACAAGCACAGAGCACCTCCGGCACCCAAACGGGCACGGTAAAAGAAAATGAGAAAAGCGCCAGTCTGTTTCTG
CAGGCAGGCGCCTTCTCTGACCGCGTCAGCGCTCAACGGCTACAACAAAAGCTGGTCAACCAATTGGGCGTCGATACCCA
AATCCAGCACTCGGAGGGTAATCTATTCCGGGTCTGGATTGGCCCCTATGAAAACCAGCAACAACGTCAACAAGTACGCC
AGACGATTGCCGACGCCGGTTTCGACCGGCCCATGCCTGTCAGCCCCTGA

Upstream 100 bases:

>100_bases
ACAACTTTTATGTGATCACCCGCTACAATCACAGTCGCCTGTACGCCATGGCCGTGCTACAACTATCACGACAATTGGCT
GCGGCACTGGAGGATAATCA

Downstream 100 bases:

>100_bases
AAACGCCCATATCAGCTATTTCTCCGGTTAACAGGCCCTCGTCAGTCCTCTAGAATGCAGCCATCAAGTGATGGCACAAC
GCAACTTGATGGCCTTTATG

Product: lipoprotein, rare lipoprotein A family lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MNRLACAVLTSAFLGACATTPGPNDGNDGPGASNGAPGSDRYSLHQDTAPEERRDISQLPEPVPTNEPRSRYGNPQSYSV
WGKTYQVLPQAEGYVAEGNASWYGQKFHGHRTSSGESFDMYQFTAAHRSLPLPTYARVTNLDNGKSLVVRVNDRGPFHED
RIIDLSWAAAVRLGIEQAGTGRVRVEAITGQQSQSQEANSTVPTAVRAALDSPPPSQAQSTSGTQTGTVKENEKSASLFL
QAGAFSDRVSAQRLQQKLVNQLGVDTQIQHSEGNLFRVWIGPYENQQQRQQVRQTIADAGFDRPMPVSP

Sequences:

>Translated_309_residues
MNRLACAVLTSAFLGACATTPGPNDGNDGPGASNGAPGSDRYSLHQDTAPEERRDISQLPEPVPTNEPRSRYGNPQSYSV
WGKTYQVLPQAEGYVAEGNASWYGQKFHGHRTSSGESFDMYQFTAAHRSLPLPTYARVTNLDNGKSLVVRVNDRGPFHED
RIIDLSWAAAVRLGIEQAGTGRVRVEAITGQQSQSQEANSTVPTAVRAALDSPPPSQAQSTSGTQTGTVKENEKSASLFL
QAGAFSDRVSAQRLQQKLVNQLGVDTQIQHSEGNLFRVWIGPYENQQQRQQVRQTIADAGFDRPMPVSP
>Mature_309_residues
MNRLACAVLTSAFLGACATTPGPNDGNDGPGASNGAPGSDRYSLHQDTAPEERRDISQLPEPVPTNEPRSRYGNPQSYSV
WGKTYQVLPQAEGYVAEGNASWYGQKFHGHRTSSGESFDMYQFTAAHRSLPLPTYARVTNLDNGKSLVVRVNDRGPFHED
RIIDLSWAAAVRLGIEQAGTGRVRVEAITGQQSQSQEANSTVPTAVRAALDSPPPSQAQSTSGTQTGTVKENEKSASLFL
QAGAFSDRVSAQRLQQKLVNQLGVDTQIQHSEGNLFRVWIGPYENQQQRQQVRQTIADAGFDRPMPVSP

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=154, Percent_Identity=40.9090909090909, Blast_Score=105, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 33553; Mature: 33553

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRLACAVLTSAFLGACATTPGPNDGNDGPGASNGAPGSDRYSLHQDTAPEERRDISQLP
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHCC
EPVPTNEPRSRYGNPQSYSVWGKTYQVLPQAEGYVAEGNASWYGQKFHGHRTSSGESFDM
CCCCCCCCHHHCCCCCCEEECCHHEEECCCCCCEEECCCCCCCCHHHCCCCCCCCCCEEH
YQFTAAHRSLPLPTYARVTNLDNGKSLVVRVNDRGPFHEDRIIDLSWAAAVRLGIEQAGT
EEEHHHHCCCCCCHHHHEECCCCCCEEEEEECCCCCCCCCCEEEEHHHHHHHHHHHCCCC
GRVRVEAITGQQSQSQEANSTVPTAVRAALDSPPPSQAQSTSGTQTGTVKENEKSASLFL
CCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
QAGAFSDRVSAQRLQQKLVNQLGVDTQIQHSEGNLFRVWIGPYENQQQRQQVRQTIADAG
ECCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCC
FDRPMPVSP
CCCCCCCCC
>Mature Secondary Structure
MNRLACAVLTSAFLGACATTPGPNDGNDGPGASNGAPGSDRYSLHQDTAPEERRDISQLP
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHCC
EPVPTNEPRSRYGNPQSYSVWGKTYQVLPQAEGYVAEGNASWYGQKFHGHRTSSGESFDM
CCCCCCCCHHHCCCCCCEEECCHHEEECCCCCCEEECCCCCCCCHHHCCCCCCCCCCEEH
YQFTAAHRSLPLPTYARVTNLDNGKSLVVRVNDRGPFHEDRIIDLSWAAAVRLGIEQAGT
EEEHHHHCCCCCCHHHHEECCCCCCEEEEEECCCCCCCCCCEEEEHHHHHHHHHHHCCCC
GRVRVEAITGQQSQSQEANSTVPTAVRAALDSPPPSQAQSTSGTQTGTVKENEKSASLFL
CCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
QAGAFSDRVSAQRLQQKLVNQLGVDTQIQHSEGNLFRVWIGPYENQQQRQQVRQTIADAG
ECCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCC
FDRPMPVSP
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]