| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834803
Identifier: 110834803
GI number: 110834803
Start: 2219470
End: 2220705
Strand: Direct
Name: 110834803
Synonym: ABO_1942
Alternate gene names: NA
Gene position: 2219470-2220705 (Clockwise)
Preceding gene: 110834802
Following gene: 110834804
Centisome position: 71.13
GC content: 60.28
Gene sequence:
>1236_bases ATGCCCATGCCAGTTGATGACTCTGTCTGGGATGTGGTGATTGTGGGCGGCGGCGCTGCCGGCCTCGCGGCGGCGGCCAG CCTGCTCAAACGCAAGCCCTCCCTATCGATAGCGATCGTAGAACCCAGCGATCGCCACTATTATCAACCCGCCTGGACCC TGGTGGGCGGCGGCTGCTTCAACCCCGCAGATACCTGCCGCTCCACCGCTTCGCTAATACCGGCCAATGCCAAATGGATT CGCAGCGAGGTGACGGGCTTCCTGCCGCAGCAGAACCAAGTCATTGTGGAAAATCACCAGCATCTGAGCTATCGCAGCTT AGTGGTGGCCCCCGGCCTAGAACTGAACTGGGGAGCCATTGCCGGTCTTGAAGAGACCTTGGGCAAGAATGGCGTGACCA GTAACTACCACTACGATCTCGCGCCCTACACCTGGGAATGCGTGCAATTGCTCAAGCAAGGCCGCGCCCTGTTTACTCAG CCGGCCATGCCCATAAAGTGCGCCGGCGCCCCACAGAAGGCCATGTACCTGTCCTGCCATCACTGGGAGAAACAGGGCTA CCTAGGCGACATTGACGTGCAGTTTCACAATGCTGGGGGCGTACTGTTCGGCGTTTCCAAGTTTGTGCCTCCGCTGATGG AATACGTAAAGCGCTACGGCGCCAACCTGAATTTCACCAGCACCCTGATTGCCGTAGAGGGCCCAACGAAGACCGCCACC TTCCGCGACACCGCTGAAGATGGCAGCACCATTGAGCGTACCGAATGCTTCGACATGCTTCATGTGGTGCCGCCACAACG CGCCCCGGAATTCATCCGCGACAGCGAGCTTGCCAATGAAAGCGGCTGGGTCGCCGTCGATGAAGCCACCCTGCAACACC CCCACTATGGCAATGTATTCAGCCTCGGGGATGTGTGTGGCGCCAGCAATGCCAAAACCGCTGCCGCGGTGCGTAAGCAG GCGCCCGTGGTAGCAGAAAACCTGCTCGCCCACCTCGCCGACCGCCCCATGCCCGCCCGCTACACCGGATACGGCGCCTG TCCGCTCACCGTGGAACAGGGCAAGGTGGTAATGGCCGAGTTCGGCTATGGCGGCAAACTGCAACCCACCTTCCCACTCA AACCCGCGGTGGCTCGCACCAGCATGTGGTGGCTCAAGCGCTACGCCATGCCGCGCATCTATTTCTCCATGATGCTGAAA GGGCACGAATGGCTGGCAAAACCAGGAAAACCATAA
Upstream 100 bases:
>100_bases CTGCCATCGGTGCAGATCAACATGCGCGCCGGGCACCTTCCTCCCGAGGAAGACAATGGCATCAGCTACCTGAAAATCCC CCTGAACGCACTCTAAGAGA
Downstream 100 bases:
>100_bases GGCACTAAGGCGATGAGACTTCCTGGCTGGCTCGCAGCATCACAATGGCTCCCACTCTATAACCGGCAGACTGCCGCTCA GGATGGGGTTGCCGCAGTTG
Product: hypothetical protein
Products: NA
Alternate protein names: FAD-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; Oxidoreductase; Pyridine Nucleotide-Disulphide Oxidoreductase; SulfideQuinone Oxidoreductase; NAD(FAD)-Dependent Dehydrogenase; Sulfide Dehydrogenase Flavoprotein Subunit; Twin-Arginine Translocation Pathway Signal; Fad-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; Sulfide-Quinone Reductase; Flavoprotein Reductase; Sulfide Quinone Oxidoreductase-Like Protein; Pyridine Nucleotide-Disulfide Oxidoreductase; Sulfide Dehydrogenase; Anti-Anti-Sigma Regulatory Factor; Filamentous Hemagglutinin; NAD(Fad)-Dependent Dehydrogenase Protein; Oxidoreductase Family Protein; Flavoprotein Reductase-Like Protein; FAD-Dependent Pyridine Nucleotide-Disulphideoxido Reductase; Oxidoreductase Pyridine Nucleotide-Disulphide Family; Pyridine Nucleotide-Disulphide Oxidoreductase Class-II; Sulfide-Quinone Oxidoreductase; NADH Dehydrogenase FAD-Containing Subunit; Sulfide Quinone-Rductase; Sulphide Quinone Reductase; Flavoprotein Reductase Conjectural; Oxidoreductase FAD-Dependent; Pyridine Nucleotide-Disulfide Oxidoreductase Family Protein; SulfideQuinone Reductase; Pyridine Nucleotide-Disulfide Oxidoreductase Family; NAD(FAD)-Dependent Dehydrogenase-Like Protein; Sulfide Dehydrogenase Related Protein
Number of amino acids: Translated: 411; Mature: 410
Protein sequence:
>411_residues MPMPVDDSVWDVVIVGGGAAGLAAAASLLKRKPSLSIAIVEPSDRHYYQPAWTLVGGGCFNPADTCRSTASLIPANAKWI RSEVTGFLPQQNQVIVENHQHLSYRSLVVAPGLELNWGAIAGLEETLGKNGVTSNYHYDLAPYTWECVQLLKQGRALFTQ PAMPIKCAGAPQKAMYLSCHHWEKQGYLGDIDVQFHNAGGVLFGVSKFVPPLMEYVKRYGANLNFTSTLIAVEGPTKTAT FRDTAEDGSTIERTECFDMLHVVPPQRAPEFIRDSELANESGWVAVDEATLQHPHYGNVFSLGDVCGASNAKTAAAVRKQ APVVAENLLAHLADRPMPARYTGYGACPLTVEQGKVVMAEFGYGGKLQPTFPLKPAVARTSMWWLKRYAMPRIYFSMMLK GHEWLAKPGKP
Sequences:
>Translated_411_residues MPMPVDDSVWDVVIVGGGAAGLAAAASLLKRKPSLSIAIVEPSDRHYYQPAWTLVGGGCFNPADTCRSTASLIPANAKWI RSEVTGFLPQQNQVIVENHQHLSYRSLVVAPGLELNWGAIAGLEETLGKNGVTSNYHYDLAPYTWECVQLLKQGRALFTQ PAMPIKCAGAPQKAMYLSCHHWEKQGYLGDIDVQFHNAGGVLFGVSKFVPPLMEYVKRYGANLNFTSTLIAVEGPTKTAT FRDTAEDGSTIERTECFDMLHVVPPQRAPEFIRDSELANESGWVAVDEATLQHPHYGNVFSLGDVCGASNAKTAAAVRKQ APVVAENLLAHLADRPMPARYTGYGACPLTVEQGKVVMAEFGYGGKLQPTFPLKPAVARTSMWWLKRYAMPRIYFSMMLK GHEWLAKPGKP >Mature_410_residues PMPVDDSVWDVVIVGGGAAGLAAAASLLKRKPSLSIAIVEPSDRHYYQPAWTLVGGGCFNPADTCRSTASLIPANAKWIR SEVTGFLPQQNQVIVENHQHLSYRSLVVAPGLELNWGAIAGLEETLGKNGVTSNYHYDLAPYTWECVQLLKQGRALFTQP AMPIKCAGAPQKAMYLSCHHWEKQGYLGDIDVQFHNAGGVLFGVSKFVPPLMEYVKRYGANLNFTSTLIAVEGPTKTATF RDTAEDGSTIERTECFDMLHVVPPQRAPEFIRDSELANESGWVAVDEATLQHPHYGNVFSLGDVCGASNAKTAAAVRKQA PVVAENLLAHLADRPMPARYTGYGACPLTVEQGKVVMAEFGYGGKLQPTFPLKPAVARTSMWWLKRYAMPRIYFSMMLKG HEWLAKPGKP
Specific function: Unknown
COG id: COG0446
COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI10864011, Length=393, Percent_Identity=37.1501272264631, Blast_Score=293, Evalue=3e-79, Organism=Caenorhabditis elegans, GI17539680, Length=428, Percent_Identity=30.8411214953271, Blast_Score=210, Evalue=1e-54, Organism=Caenorhabditis elegans, GI115534373, Length=339, Percent_Identity=34.5132743362832, Blast_Score=194, Evalue=6e-50, Organism=Drosophila melanogaster, GI24657386, Length=383, Percent_Identity=37.0757180156658, Blast_Score=272, Evalue=4e-73, Organism=Drosophila melanogaster, GI24657391, Length=383, Percent_Identity=37.0757180156658, Blast_Score=272, Evalue=4e-73,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44950; Mature: 44819
Theoretical pI: Translated: 7.80; Mature: 7.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPMPVDDSVWDVVIVGGGAAGLAAAASLLKRKPSLSIAIVEPSDRHYYQPAWTLVGGGCF CCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCEECCCEEEECCCCC NPADTCRSTASLIPANAKWIRSEVTGFLPQQNQVIVENHQHLSYRSLVVAPGLELNWGAI CHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEEEECCCEECCHHH AGLEETLGKNGVTSNYHYDLAPYTWECVQLLKQGRALFTQPAMPIKCAGAPQKAMYLSCH CCHHHHHCCCCCCCCEEEECCCCHHHHHHHHHCCCCEECCCCCCEEECCCCCCEEEEEEE HWEKQGYLGDIDVQFHNAGGVLFGVSKFVPPLMEYVKRYGANLNFTSTLIAVEGPTKTAT ECCCCCCEEEEEEEEECCCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCE FRDTAEDGSTIERTECFDMLHVVPPQRAPEFIRDSELANESGWVAVDEATLQHPHYGNVF ECCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEECHHHHCCCCCCCEE SLGDVCGASNAKTAAAVRKQAPVVAENLLAHLADRPMPARYTGYGACPLTVEQGKVVMAE EHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEEE FGYGGKLQPTFPLKPAVARTSMWWLKRYAMPRIYFSMMLKGHEWLAKPGKP CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCC >Mature Secondary Structure PMPVDDSVWDVVIVGGGAAGLAAAASLLKRKPSLSIAIVEPSDRHYYQPAWTLVGGGCF CCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCEECCCEEEECCCCC NPADTCRSTASLIPANAKWIRSEVTGFLPQQNQVIVENHQHLSYRSLVVAPGLELNWGAI CHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEEEECCCEECCHHH AGLEETLGKNGVTSNYHYDLAPYTWECVQLLKQGRALFTQPAMPIKCAGAPQKAMYLSCH CCHHHHHCCCCCCCCEEEECCCCHHHHHHHHHCCCCEECCCCCCEEECCCCCCEEEEEEE HWEKQGYLGDIDVQFHNAGGVLFGVSKFVPPLMEYVKRYGANLNFTSTLIAVEGPTKTAT ECCCCCCEEEEEEEEECCCCEEEEHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCE FRDTAEDGSTIERTECFDMLHVVPPQRAPEFIRDSELANESGWVAVDEATLQHPHYGNVF ECCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCEEECHHHHCCCCCCCEE SLGDVCGASNAKTAAAVRKQAPVVAENLLAHLADRPMPARYTGYGACPLTVEQGKVVMAE EHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEEE FGYGGKLQPTFPLKPAVARTSMWWLKRYAMPRIYFSMMLKGHEWLAKPGKP CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA