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The map label for this gene is ybeY [C]

Identifier: 110834797

GI number: 110834797

Start: 2212501

End: 2213028

Strand: Direct

Name: ybeY [C]

Synonym: ABO_1936

Alternate gene names: 110834797

Gene position: 2212501-2213028 (Clockwise)

Preceding gene: 110834796

Following gene: 110834798

Centisome position: 70.91

GC content: 57.39

Gene sequence:

>528_bases
ATGAACGGGATACCGACACCCACCGTTGATATCCAGTGGGCCAGCGACGCCCCGGACGCCCCCGATGAAACCCACTTATG
TGAATGGGTACGCCATGCGGCCATTGCTGCCGGTGGTGTGGTGGGCGACATCACCCTGCGCATCGTGGATGAAGAGGAAA
TTCGTACTCTGAACCGCGATTACCGTGACAAGGATGCTCCCACCAATGTGTTGTCGTTCCCTTTTGAAATGCCCGAAGGG
CTGCCGGAAGGCGCCATGGACCCACTGGTGGGCGACATTATTATCTGCGCCGCCGTAGTGCGCCGCGAAGCCAACGAACA
GCACAAACCCCTGGTCGCCCACTGGGCGCACATGGTCACCCACGGTGTTCTACACCTGCTGGGTTATGACCATATAGACG
ATGACGACGCAATCGTCATGGAGACTCTGGAAATCCGTGCCCTTGGCGAGTTGGGTTTTCCTGATCCTTACAGCCCTGCG
CAACAAGAAAGCCAGGCACAACCTGAAAATACGGAGCTTAACCCCTGA

Upstream 100 bases:

>100_bases
GTGTTGGAAGGGGTAAAAGGGATTGGGGTAACCCGCTTCGATAGCCGCGACGTGGTTCGCCACCCGCTGGTTCAACGCAT
TGTAGAGGCCTACGACCGTC

Downstream 100 bases:

>100_bases
TGTCGGACGATTTTTCGGATAACGGTACCAGCCGAAGTTGGTTGGAGCGTGTCGGCCAGTTTTTCTCACCCACCCCGGGT
GACCGCAACGAACTACTGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MNGIPTPTVDIQWASDAPDAPDETHLCEWVRHAAIAAGGVVGDITLRIVDEEEIRTLNRDYRDKDAPTNVLSFPFEMPEG
LPEGAMDPLVGDIIICAAVVRREANEQHKPLVAHWAHMVTHGVLHLLGYDHIDDDDAIVMETLEIRALGELGFPDPYSPA
QQESQAQPENTELNP

Sequences:

>Translated_175_residues
MNGIPTPTVDIQWASDAPDAPDETHLCEWVRHAAIAAGGVVGDITLRIVDEEEIRTLNRDYRDKDAPTNVLSFPFEMPEG
LPEGAMDPLVGDIIICAAVVRREANEQHKPLVAHWAHMVTHGVLHLLGYDHIDDDDAIVMETLEIRALGELGFPDPYSPA
QQESQAQPENTELNP
>Mature_175_residues
MNGIPTPTVDIQWASDAPDAPDETHLCEWVRHAAIAAGGVVGDITLRIVDEEEIRTLNRDYRDKDAPTNVLSFPFEMPEG
LPEGAMDPLVGDIIICAAVVRREANEQHKPLVAHWAHMVTHGVLHLLGYDHIDDDDAIVMETLEIRALGELGFPDPYSPA
QQESQAQPENTELNP

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=150, Percent_Identity=50.6666666666667, Blast_Score=133, Evalue=6e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_ALCBS (Q0VN64)

Other databases:

- EMBL:   AM286690
- RefSeq:   YP_693656.1
- ProteinModelPortal:   Q0VN64
- SMR:   Q0VN64
- STRING:   Q0VN64
- GeneID:   4211751
- GenomeReviews:   AM286690_GR
- KEGG:   abo:ABO_1936
- NMPDR:   fig|393595.12.peg.1937
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   DIIIARE
- PhylomeDB:   Q0VN64
- BioCyc:   ABOR393595:ABO_1936-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 19302; Mature: 19302

Theoretical pI: Translated: 4.09; Mature: 4.09

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGIPTPTVDIQWASDAPDAPDETHLCEWVRHAAIAAGGVVGDITLRIVDEEEIRTLNRD
CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEEECHHHHHHHHHH
YRDKDAPTNVLSFPFEMPEGLPEGAMDPLVGDIIICAAVVRREANEQHKPLVAHWAHMVT
CCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
HGVLHLLGYDHIDDDDAIVMETLEIRALGELGFPDPYSPAQQESQAQPENTELNP
HHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCC
>Mature Secondary Structure
MNGIPTPTVDIQWASDAPDAPDETHLCEWVRHAAIAAGGVVGDITLRIVDEEEIRTLNRD
CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEEECHHHHHHHHHH
YRDKDAPTNVLSFPFEMPEGLPEGAMDPLVGDIIICAAVVRREANEQHKPLVAHWAHMVT
CCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
HGVLHLLGYDHIDDDDAIVMETLEIRALGELGFPDPYSPAQQESQAQPENTELNP
HHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA