BacMap

Definition	Alcanivorax borkumensis SK2 chromosome, complete genome.
Accession	NC_008260
Length	3,120,143

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The map label for this gene is yciK [H]

Identifier: 110834616

GI number: 110834616

Start: 2001130

End: 2001897

Strand: Direct

Name: yciK [H]

Synonym: ABO_1755

Alternate gene names: 110834616

Gene position: 2001130-2001897 (Clockwise)

Preceding gene: 110834615

Following gene: 110834617

Centisome position: 64.14

GC content: 58.59

Gene sequence:

>768_bases
ATGACTGATATCCAACAACAAGCCCTCAATTACCAATGCGCTGAAGACACCTTCAAAGGTCGTATTATCCTCGTCACTGG
TGCAGGCGCCGGCATCGGCCGCAGCGCCGCGCTGGCCCTGGCAGCCCATGGCGCCACGGTCATTCTGCTAGGCCGCACCC
AGGAAAAACTGGAAGCGGTGTACGATGAAATCAAAGCCGCGGGTGGCCCGGAGCCCGCGCTGGCGCCGGTGAATCTAACG
GTCGCTCGCCCGGAAGATTTTCAGGAACTGGCCGGGCTTTTTGACAAAGAGTTCGGGCGACTGGATGGCATCTTGCACAA
CGCATCCATGCTCGGCGACATTACGCCTATGGATCGTTATGCCACTGGCACCTGGGATTCGGTCATGCAAACCAATGTGA
ATAGCGCTTTCTATCTAACCCAAGCCATGTTGCCGTTGCTGCGCGCCAGCGACGATGCTCGCCTGCTATTTACATCCTCC
AGCGTGGGGCGCAAAGGCCGTGCTTTCTGGGGTGCCTATGCGGTCTCCAAGGCGGCCACTGAAAACCTAGCCCAAGTGCT
GGCGGAAGAACTGGAAAACACCAGCAACATTCGCGTCAACACCGTTAACCCTGGCGGTACGCGCACCGACATGCGCGCCA
TGGCCTACCCCGGCGAAGACCCTCTCACATTGAAGACCCCCGCCGACATCATGGCCCCCTATCTGTTCTTGTTGGGCCCG
GATAGCCGAAACGTCACCGGCGCATCTATCGATGCTCAACCGAAGTAA

Upstream 100 bases:

>100_bases
CACTAGAACGGCAATTAAGGCAGATGCCCGCTCCACCTTACGGTTAGTTACAGCACCTAAGTCAGGCCTCGTGCTTGGCG
AAAGCGACACAGGAACCACC

Downstream 100 bases:

>100_bases
CAACGGCAAGTTCAAAGTAGAACGGTCAACGTTGGAAAGAGGCAATCACGTCAGCAGCGTGTTGGTACGGTTCAATGCTC
GCGGCTAAATGCAGCGCGGG

Product: short chain dehydrogenase/reductase family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MTDIQQQALNYQCAEDTFKGRIILVTGAGAGIGRSAALALAAHGATVILLGRTQEKLEAVYDEIKAAGGPEPALAPVNLT
VARPEDFQELAGLFDKEFGRLDGILHNASMLGDITPMDRYATGTWDSVMQTNVNSAFYLTQAMLPLLRASDDARLLFTSS
SVGRKGRAFWGAYAVSKAATENLAQVLAEELENTSNIRVNTVNPGGTRTDMRAMAYPGEDPLTLKTPADIMAPYLFLLGP
DSRNVTGASIDAQPK

Sequences:

>Translated_255_residues
MTDIQQQALNYQCAEDTFKGRIILVTGAGAGIGRSAALALAAHGATVILLGRTQEKLEAVYDEIKAAGGPEPALAPVNLT
VARPEDFQELAGLFDKEFGRLDGILHNASMLGDITPMDRYATGTWDSVMQTNVNSAFYLTQAMLPLLRASDDARLLFTSS
SVGRKGRAFWGAYAVSKAATENLAQVLAEELENTSNIRVNTVNPGGTRTDMRAMAYPGEDPLTLKTPADIMAPYLFLLGP
DSRNVTGASIDAQPK
>Mature_254_residues
TDIQQQALNYQCAEDTFKGRIILVTGAGAGIGRSAALALAAHGATVILLGRTQEKLEAVYDEIKAAGGPEPALAPVNLTV
ARPEDFQELAGLFDKEFGRLDGILHNASMLGDITPMDRYATGTWDSVMQTNVNSAFYLTQAMLPLLRASDDARLLFTSSS
VGRKGRAFWGAYAVSKAATENLAQVLAEELENTSNIRVNTVNPGGTRTDMRAMAYPGEDPLTLKTPADIMAPYLFLLGPD
SRNVTGASIDAQPK

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI4504505, Length=240, Percent_Identity=30, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=28.1632653061224, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI19923817, Length=251, Percent_Identity=23.5059760956175, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI33667109, Length=224, Percent_Identity=28.125, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI20149619, Length=200, Percent_Identity=29, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI32483357, Length=248, Percent_Identity=26.6129032258064, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI4557649, Length=198, Percent_Identity=28.7878787878788, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI15277342, Length=251, Percent_Identity=28.2868525896414, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI7657478, Length=228, Percent_Identity=30.2631578947368, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI7705925, Length=249, Percent_Identity=26.9076305220884, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI1787526, Length=246, Percent_Identity=55.2845528455285, Blast_Score=254, Evalue=3e-69,
Organism=Escherichia coli, GI1787335, Length=241, Percent_Identity=30.2904564315353, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787820, Length=212, Percent_Identity=25.9433962264151, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87082100, Length=203, Percent_Identity=33.4975369458128, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786812, Length=205, Percent_Identity=29.7560975609756, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790717, Length=195, Percent_Identity=26.6666666666667, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787905, Length=237, Percent_Identity=28.6919831223629, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789208, Length=251, Percent_Identity=24.7011952191235, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI87082160, Length=241, Percent_Identity=24.896265560166, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1789378, Length=253, Percent_Identity=29.6442687747036, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562908, Length=210, Percent_Identity=34.7619047619048, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17551412, Length=209, Percent_Identity=34.4497607655502, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17562906, Length=209, Percent_Identity=32.0574162679426, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17560220, Length=213, Percent_Identity=31.924882629108, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17562910, Length=208, Percent_Identity=30.2884615384615, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17568967, Length=245, Percent_Identity=29.7959183673469, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17544670, Length=200, Percent_Identity=30, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17560676, Length=200, Percent_Identity=32.5, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17561402, Length=246, Percent_Identity=26.0162601626016, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17531453, Length=197, Percent_Identity=32.48730964467, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17559104, Length=209, Percent_Identity=29.6650717703349, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=206, Percent_Identity=31.0679611650485, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=202, Percent_Identity=28.2178217821782, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=209, Percent_Identity=28.2296650717703, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562990, Length=202, Percent_Identity=29.2079207920792, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17555706, Length=254, Percent_Identity=27.5590551181102, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71994604, Length=202, Percent_Identity=29.7029702970297, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71997402, Length=196, Percent_Identity=29.5918367346939, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17536651, Length=190, Percent_Identity=28.4210526315789, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=206, Percent_Identity=29.126213592233, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17536025, Length=190, Percent_Identity=28.9473684210526, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193210355, Length=203, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17538480, Length=193, Percent_Identity=28.4974093264249, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17563726, Length=204, Percent_Identity=28.4313725490196, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=193, Percent_Identity=30.5699481865285, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17555612, Length=224, Percent_Identity=29.0178571428571, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17564282, Length=185, Percent_Identity=24.8648648648649, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=243, Percent_Identity=30.0411522633745, Blast_Score=87, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6323882, Length=203, Percent_Identity=29.5566502463054, Blast_Score=73, Evalue=4e-14,
Organism=Saccharomyces cerevisiae, GI6322227, Length=252, Percent_Identity=26.5873015873016, Blast_Score=69, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6324126, Length=247, Percent_Identity=27.1255060728745, Blast_Score=66, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6322226, Length=196, Percent_Identity=27.5510204081633, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28571526, Length=198, Percent_Identity=36.8686868686869, Blast_Score=106, Evalue=1e-23,
Organism=Drosophila melanogaster, GI21355319, Length=246, Percent_Identity=30.0813008130081, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI21357041, Length=198, Percent_Identity=34.8484848484849, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24644339, Length=198, Percent_Identity=32.3232323232323, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI23397609, Length=198, Percent_Identity=33.3333333333333, Blast_Score=87, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24643142, Length=196, Percent_Identity=34.1836734693878, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI18859837, Length=196, Percent_Identity=31.1224489795918, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24640492, Length=192, Percent_Identity=28.125, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21358495, Length=219, Percent_Identity=30.5936073059361, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24639444, Length=242, Percent_Identity=28.099173553719, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24647946, Length=225, Percent_Identity=28.4444444444444, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI45553409, Length=218, Percent_Identity=28.4403669724771, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24647948, Length=218, Percent_Identity=28.4403669724771, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27251; Mature: 27120

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDIQQQALNYQCAEDTFKGRIILVTGAGAGIGRSAALALAAHGATVILLGRTQEKLEAV
CCCHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHEEECCCEEEEECCCHHHHHHH
YDEIKAAGGPEPALAPVNLTVARPEDFQELAGLFDKEFGRLDGILHNASMLGDITPMDRY
HHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
ATGTWDSVMQTNVNSAFYLTQAMLPLLRASDDARLLFTSSSVGRKGRAFWGAYAVSKAAT
CCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH
ENLAQVLAEELENTSNIRVNTVNPGGTRTDMRAMAYPGEDPLTLKTPADIMAPYLFLLGP
HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEECCCCCCEEEECCHHHHHCEEEEECC
DSRNVTGASIDAQPK
CCCCCCCCCCCCCCC
>Mature Secondary Structure 
TDIQQQALNYQCAEDTFKGRIILVTGAGAGIGRSAALALAAHGATVILLGRTQEKLEAV
CCHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHEEECCCEEEEECCCHHHHHHH
YDEIKAAGGPEPALAPVNLTVARPEDFQELAGLFDKEFGRLDGILHNASMLGDITPMDRY
HHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
ATGTWDSVMQTNVNSAFYLTQAMLPLLRASDDARLLFTSSSVGRKGRAFWGAYAVSKAAT
CCCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH
ENLAQVLAEELENTSNIRVNTVNPGGTRTDMRAMAYPGEDPLTLKTPADIMAPYLFLLGP
HHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEECCCCCCEEEECCHHHHHCEEEEECC
DSRNVTGASIDAQPK
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1885549 [H]