BacMap

Definition	Alcanivorax borkumensis SK2 chromosome, complete genome.
Accession	NC_008260
Length	3,120,143

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The map label for this gene is phnC [H]

Identifier: 110834583

GI number: 110834583

Start: 1960284

End: 1960961

Strand: Direct

Name: phnC [H]

Synonym: ABO_1722

Alternate gene names: 110834583

Gene position: 1960284-1960961 (Clockwise)

Preceding gene: 110834582

Following gene: 110834584

Centisome position: 62.83

GC content: 59.0

Gene sequence:

>678_bases
GTGTTCCATTTTCAGCAGGCTCAGCTGGGGCATGGCGATCAGGTTGTCTTTTCTAACCTGACGCTAACCATCGAGCAAGG
CGAGAAAGTCGCCCTGCTCGGCCCCTCTGGTGCCGGCAAATCCACCCTGCTTAATGCCCTGCGCAACCAGCAGGAGAGCG
CCTGTGCCTGGTGCCCTCAGGCTGGCGCCCTGGTGCCCATGCTTAGCGTGTTCCACAACATCTACATGGGCGCCCTGTCA
CGCAATAGCACTCTCACTAATCTGCGAAATCTGATTGCTCCTAGTCGCCATGAGCGTGAACAAATTGGCGCCTTGGCCAC
CGATCTGTCTCTGCACGACAAACTGTTCACCAGTATCGACCAGCTCTCCGGCGGCCAGGCGCAACGCGCCGCACTGGGCC
GGGCGCTCTATACCCAACGCCCGATTCTACTGGCCGATGAACCGGTATCCAGCCTGGACGAACATCAAGGCCTTGCCTTG
CTGACCCTGTCGCTGGCCCGCCATGACAGTGCCGTAATCGCCCTGCACGATCGAGCGCTGGCGCTGGCCTGCAGCGATAG
AATCATTGGCCTAAACCACGGCAAAGTCGTACTCGATGCCGCCACCCATTCGCTGTCACTCAGCGATCTGGATGCGTTAT
ATCAGGACGCTTCATACCAACACCGCTCGTATCAGTGA

Upstream 100 bases:

>100_bases
GTGAGAAGTTTGTACCCGCGTCCAATGCGGACTACGCCCCCATCGAGGAAACCGCCAGCGCCATTGGTCTGTTGGACTAA
CGGCCACGGTCAGCACTGAC

Downstream 100 bases:

>100_bases
ACACCCCACCATGAAACCGGCCAGCGCCCCATTGAACACCACCGCCAGTCGCTGGCGACGCACCACCGGTGGCATCGCCC
TGGCCGGCCTGCTGGCACTG

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MFHFQQAQLGHGDQVVFSNLTLTIEQGEKVALLGPSGAGKSTLLNALRNQQESACAWCPQAGALVPMLSVFHNIYMGALS
RNSTLTNLRNLIAPSRHEREQIGALATDLSLHDKLFTSIDQLSGGQAQRAALGRALYTQRPILLADEPVSSLDEHQGLAL
LTLSLARHDSAVIALHDRALALACSDRIIGLNHGKVVLDAATHSLSLSDLDALYQDASYQHRSYQ

Sequences:

>Translated_225_residues
MFHFQQAQLGHGDQVVFSNLTLTIEQGEKVALLGPSGAGKSTLLNALRNQQESACAWCPQAGALVPMLSVFHNIYMGALS
RNSTLTNLRNLIAPSRHEREQIGALATDLSLHDKLFTSIDQLSGGQAQRAALGRALYTQRPILLADEPVSSLDEHQGLAL
LTLSLARHDSAVIALHDRALALACSDRIIGLNHGKVVLDAATHSLSLSDLDALYQDASYQHRSYQ
>Mature_225_residues
MFHFQQAQLGHGDQVVFSNLTLTIEQGEKVALLGPSGAGKSTLLNALRNQQESACAWCPQAGALVPMLSVFHNIYMGALS
RNSTLTNLRNLIAPSRHEREQIGALATDLSLHDKLFTSIDQLSGGQAQRAALGRALYTQRPILLADEPVSSLDEHQGLAL
LTLSLARHDSAVIALHDRALALACSDRIIGLNHGKVVLDAATHSLSLSDLDALYQDASYQHRSYQ

Specific function: Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system [H]

COG id: COG3638

COG function: function code P; ABC-type phosphate/phosphonate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI42490749, Length=251, Percent_Identity=27.8884462151394, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI190343023, Length=153, Percent_Identity=35.2941176470588, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI255708477, Length=230, Percent_Identity=29.1304347826087, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI148612844, Length=230, Percent_Identity=29.1304347826087, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI42741659, Length=227, Percent_Identity=29.0748898678414, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1790544, Length=228, Percent_Identity=32.4561403508772, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI87081709, Length=212, Percent_Identity=31.6037735849057, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787029, Length=235, Percent_Identity=26.8085106382979, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1786703, Length=227, Percent_Identity=31.7180616740088, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1787105, Length=201, Percent_Identity=32.8358208955224, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788225, Length=219, Percent_Identity=31.5068493150685, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1786253, Length=200, Percent_Identity=32.5, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1788761, Length=219, Percent_Identity=30.5936073059361, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790467, Length=220, Percent_Identity=29.0909090909091, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI87082267, Length=207, Percent_Identity=29.4685990338164, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1789891, Length=213, Percent_Identity=30.5164319248826, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87081791, Length=203, Percent_Identity=30.5418719211823, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788165, Length=208, Percent_Identity=26.9230769230769, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787112, Length=225, Percent_Identity=29.3333333333333, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1789032, Length=208, Percent_Identity=31.25, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1786872, Length=214, Percent_Identity=28.9719626168224, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787758, Length=218, Percent_Identity=30.2752293577982, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71992290, Length=225, Percent_Identity=29.7777777777778, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193209708, Length=224, Percent_Identity=28.125, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17569145, Length=212, Percent_Identity=30.188679245283, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17567265, Length=216, Percent_Identity=29.1666666666667, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17543740, Length=222, Percent_Identity=27.027027027027, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17569143, Length=214, Percent_Identity=30.3738317757009, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI115535101, Length=218, Percent_Identity=29.3577981651376, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17565938, Length=222, Percent_Identity=25.6756756756757, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17567269, Length=212, Percent_Identity=30.6603773584906, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17541710, Length=219, Percent_Identity=27.3972602739726, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI85724864, Length=209, Percent_Identity=27.7511961722488, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24580555, Length=209, Percent_Identity=27.7511961722488, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI85816269, Length=209, Percent_Identity=27.7511961722488, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24580553, Length=209, Percent_Identity=27.7511961722488, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28574744, Length=215, Percent_Identity=28.3720930232558, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI45552341, Length=164, Percent_Identity=27.4390243902439, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI45552337, Length=164, Percent_Identity=27.4390243902439, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI45552355, Length=164, Percent_Identity=27.4390243902439, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45552347, Length=164, Percent_Identity=27.4390243902439, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45552359, Length=164, Percent_Identity=27.4390243902439, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45552339, Length=164, Percent_Identity=27.4390243902439, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45550972, Length=164, Percent_Identity=27.4390243902439, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI45552361, Length=164, Percent_Identity=27.4390243902439, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI45552357, Length=164, Percent_Identity=27.4390243902439, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI45552335, Length=164, Percent_Identity=27.4390243902439, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI45552363, Length=164, Percent_Identity=27.4390243902439, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI45552351, Length=164, Percent_Identity=27.4390243902439, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI45552349, Length=164, Percent_Identity=27.4390243902439, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24583969, Length=164, Percent_Identity=27.4390243902439, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI45552353, Length=164, Percent_Identity=27.4390243902439, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI45552345, Length=164, Percent_Identity=27.4390243902439, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI45552343, Length=164, Percent_Identity=27.4390243902439, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR012693
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: =3.6.3.28 [H]

Molecular weight: Translated: 24325; Mature: 24325

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFHFQQAQLGHGDQVVFSNLTLTIEQGEKVALLGPSGAGKSTLLNALRNQQESACAWCPQ
CCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCHHHHHCCCC
AGALVPMLSVFHNIYMGALSRNSTLTNLRNLIAPSRHEREQIGALATDLSLHDKLFTSID
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QLSGGQAQRAALGRALYTQRPILLADEPVSSLDEHQGLALLTLSLARHDSAVIALHDRAL
HHCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHCCEEEEEEEHHHCCCEEEEEECCEE
ALACSDRIIGLNHGKVVLDAATHSLSLSDLDALYQDASYQHRSYQ
EEEECCCEEECCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MFHFQQAQLGHGDQVVFSNLTLTIEQGEKVALLGPSGAGKSTLLNALRNQQESACAWCPQ
CCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCHHHHHCCCC
AGALVPMLSVFHNIYMGALSRNSTLTNLRNLIAPSRHEREQIGALATDLSLHDKLFTSID
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QLSGGQAQRAALGRALYTQRPILLADEPVSSLDEHQGLALLTLSLARHDSAVIALHDRAL
HHCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHCCEEEEEEEHHHCCCEEEEEECCEE
ALACSDRIIGLNHGKVVLDAATHSLSLSDLDALYQDASYQHRSYQ
EEEECCCEEECCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA