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The map label for this gene is rnfA

Identifier: 110834470

GI number: 110834470

Start: 1841881

End: 1842465

Strand: Direct

Name: rnfA

Synonym: ABO_1609

Alternate gene names: 110834470

Gene position: 1841881-1842465 (Clockwise)

Preceding gene: 110834464

Following gene: 110834471

Centisome position: 59.03

GC content: 55.56

Gene sequence:

>585_bases
ATGACTGAGTACGTCCTGATTCTGATCAGCGCTGTGCTGGTGAACAATTTCGTGCTGGTGCAGTTCCTTGGGCTGTGCCC
ATTCATGGGGGTCTCCAATAAAGTGGAGACCGCCATGGGTATGTCTTTGGCCACCACTTTCGTGCTGACCCTGTCTTCGG
TGCTTGCCTACCTGACCTGGGCCTACATTCTGGTGCCCTTTGAACTGGAATACCTGCGCACCATCAGCTTTATTTTGGTG
ATCGCCGTGGCCGTGCAGTTCACCGAAATGTTTGTTAAGAAAGCCAGCCCCTTGCTGTACCGGGTGCTGGGCGTCTTTCT
GCCCCTCATTACCTCTAACTGTGCCGTGCTGGGCGTGGCTCTGCTGAATGTTCGCCAGGAAGACGCCACCTTTATGTCGT
CGCTGACCTATGGTTTCGGTGCCGCCATTGGTTTTTCCCTGGTACTGATTCTGTTTGCCGCCATGCGTGAGCGCATTGCC
GTGGCCGATGTGCCCGAAGCTTTTCGCGGCCCCAGCATCGGCCTGATTACCGCTGGCTTGATGTCGCTGGCGTTCATGGG
CTTTTCCGGGTTGATCAAGCTATGA

Upstream 100 bases:

>100_bases
CATTCTTGAGCCAATACAGGCGCTGCCGCATACTATGCACCCTTAACGCCCTGTAAACAGGGCGTTTACTCCTATTTTCG
GCAAGCGAGCCTGCGATCAC

Downstream 100 bases:

>100_bases
GTGGTGTACTGATTGCTGTCGCCGCCCTGCTAGCCTTGGCCGCCGTGTTCGGTGCGGTGCTGGGTTTTGCCTCGGAAAAG
TTCAAAGTGGAAGGCGACCC

Product: electron transport complex protein RnfA

Products: NA

Alternate protein names: Nitrogen fixation protein rnfA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MTEYVLILISAVLVNNFVLVQFLGLCPFMGVSNKVETAMGMSLATTFVLTLSSVLAYLTWAYILVPFELEYLRTISFILV
IAVAVQFTEMFVKKASPLLYRVLGVFLPLITSNCAVLGVALLNVRQEDATFMSSLTYGFGAAIGFSLVLILFAAMRERIA
VADVPEAFRGPSIGLITAGLMSLAFMGFSGLIKL

Sequences:

>Translated_194_residues
MTEYVLILISAVLVNNFVLVQFLGLCPFMGVSNKVETAMGMSLATTFVLTLSSVLAYLTWAYILVPFELEYLRTISFILV
IAVAVQFTEMFVKKASPLLYRVLGVFLPLITSNCAVLGVALLNVRQEDATFMSSLTYGFGAAIGFSLVLILFAAMRERIA
VADVPEAFRGPSIGLITAGLMSLAFMGFSGLIKL
>Mature_193_residues
TEYVLILISAVLVNNFVLVQFLGLCPFMGVSNKVETAMGMSLATTFVLTLSSVLAYLTWAYILVPFELEYLRTISFILVI
AVAVQFTEMFVKKASPLLYRVLGVFLPLITSNCAVLGVALLNVRQEDATFMSSLTYGFGAAIGFSLVLILFAAMRERIAV
ADVPEAFRGPSIGLITAGLMSLAFMGFSGLIKL

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family

Homologues:

Organism=Escherichia coli, GI1787914, Length=194, Percent_Identity=70.6185567010309, Blast_Score=274, Evalue=3e-75,
Organism=Escherichia coli, GI1787919, Length=164, Percent_Identity=32.9268292682927, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFA_ALCBS (Q0VP41)

Other databases:

- EMBL:   AM286690
- RefSeq:   YP_693329.1
- STRING:   Q0VP41
- GeneID:   4212121
- GenomeReviews:   AM286690_GR
- KEGG:   abo:ABO_1609
- NMPDR:   fig|393595.12.peg.1612
- eggNOG:   COG4657
- HOGENOM:   HBG624915
- OMA:   LRTIAFI
- PhylomeDB:   Q0VP41
- BioCyc:   ABOR393595:ABO_1609-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_00459
- InterPro:   IPR003667
- InterPro:   IPR011293
- PIRSF:   PIRSF006102
- TIGRFAMs:   TIGR01943

Pfam domain/function: PF02508 Rnf-Nqr

EC number: NA

Molecular weight: Translated: 21045; Mature: 20913

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x12ade8a4)-; HASH(0x12b029c0)-; HASH(0x10975cbc)-; HASH(0x12c39d78)-; HASH(0x12f0fb10)-; HASH(0x12c19458)-;

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEYVLILISAVLVNNFVLVQFLGLCPFMGVSNKVETAMGMSLATTFVLTLSSVLAYLTW
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AYILVPFELEYLRTISFILVIAVAVQFTEMFVKKASPLLYRVLGVFLPLITSNCAVLGVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHH
LLNVRQEDATFMSSLTYGFGAAIGFSLVLILFAAMRERIAVADVPEAFRGPSIGLITAGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHH
MSLAFMGFSGLIKL
HHHHHHHHHHHHCH
>Mature Secondary Structure 
TEYVLILISAVLVNNFVLVQFLGLCPFMGVSNKVETAMGMSLATTFVLTLSSVLAYLTW
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AYILVPFELEYLRTISFILVIAVAVQFTEMFVKKASPLLYRVLGVFLPLITSNCAVLGVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHH
LLNVRQEDATFMSSLTYGFGAAIGFSLVLILFAAMRERIAVADVPEAFRGPSIGLITAGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHH
MSLAFMGFSGLIKL
HHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA