| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110834396
Identifier: 110834396
GI number: 110834396
Start: 1756148
End: 1758808
Strand: Direct
Name: 110834396
Synonym: ABO_1535
Alternate gene names: NA
Gene position: 1756148-1758808 (Clockwise)
Preceding gene: 110834395
Following gene: 110834397
Centisome position: 56.28
GC content: 54.15
Gene sequence:
>2661_bases ATGACCCATCGATTGTTTAATGCCTATTGCCGGGCTGTACTGGCACACCCTGTTTTCTGGCTAGTGCTACTGGTGCTCAT ATGCGGCATTGCCGGAACCCAAGCCCGCAATTTCAAGATCGACGCGTCAGCGGATTCCATGGTGTTGGAAAATGACTCGG CACTGCAGTATTACCGCAAAATCGCCAAACAATATGGCGGCAGTGATTTCCTCGTCATTACCTATAGCCCTAAAGACAAA CCGTTATTCGAGCAGAGCAGCTTGGAACACCTGCAATCCTTACAGCAGGCTCTCAAAAAGGTAAACCGCGTCAGTTCGGT CTACAGCATGTTGGATGTGCCCTTGCTGTTCAGCCCTCAGGTGGAATTCAGTGACCTAGCCAATGAATATCGCACCCTCA CTAGCGAAGGCGTAGACCTATCGTTGGCTGAGAAAGAGTTCACCGATAAAAACCCGCTCTACGAAGACCTGCTGGTCAGC GATGACGGCAACACCACCGCCCTGCTGGTGAGCTTCGAACGGGATCAGAAATATTTCGACCTGCTTTACAAGCGCAACGA TCTGCGTGACCTGGAAGACAACGGCGCACTGGATGAACAAGGCCAGCAAGAGCTAGCAGCTGCCAGCCGTGCCTTCAGCG ACTACAGCAGCCAGATTCAGCAACGCACTGCCGGTGAAATCGACCAGGTACGCAACATCATGGATGGCTACCGGAACGAG GCCAACCTGTTCCTCGGTGGCGTCCCCATGATTACCACCGACTTAGTGCGCTTTATTCGTTCAGATTTAAAAGTGTTCGG CGTTGGTGTACTGGTCTTCCTCATCCTTACCCTCTTCCTGATCTTCCGCCGCCCCCGTTGGGTGATCGTGCCGCTGGCCT GCTGTGGCGTCACCGTACTGACCGTTACTGGCTGGCTGGGCTGGGTGGACTGGAAAGTGTCCGTCATCAGTAGCAACTAT ATTTCCTTGCTGCTGATCATCACCATGTCCATCACCATTCACCTCACCGTGCGCTTTCGTGAGCTGCACGAAGAAAATCC GCAGGCTAGCCAAAAATGGCTGATTCGCGAAACCGCCGCTCACATGATGCGCCCCAGCATTTATATGATCTTAACCACCA TGGTGGGCTTCTCCTCACTGGTGATCAGCGGCATTCGCCCGGTGATTGACTTCGGCTGGATGATGACCCTGGGGCTGGGC ATATCGCTAATCGTCTGCTTTCTTGTATTCCCAGCTCTGCTGGCACCGCTGGCAGCCGGCACCCCTCGACAAGGCCGTGA CATCAGCCGCGAGCTAACCCTAGCCTTTGCCGGCTTTACCGAACGCCACCGCCCGCTGTTGCTATTGCTTGCCTTGGGTG TAATCGCCACTTCCCTGTGGGGAATAAGCCGCCTCACCGTGGAAAACCGGTTTATTGATTACTTCCAGAAAGACACGGAA ATTTACCAGGGCATGCTGCAGATTGATCGCAAGCTAGGCGGCACCACTCCGCTGGATATCGTTATCGATGCGCCCAAAAC CACAGCGGCGCAGAACGCCGCACTGGGGCAACCCGCCACCGGTTGGGATGGCGCCAGCGTAGACGACGAGATCAGCGACC CGTTTGCATCTGATAGCGCTAACGAGGTGGATAACACAGACCCCTTCGCAGACAGAGACCCGTTCGCCACAGACAGTGCC GATCCGTTTGCCGACAGCGATCCTTTTGCCACCGAATCCGGCACAGACCCCTTCGCCTCTACACCAGAGAAAACCAAACC TAACCCGCTCAAAGGAGCCTACTGGTTTACCCCTGCCCGGCTGGGTCAGCTAGTAGATATTCAGAATTATCTAGAGTCTC TACCAGAAACCGGCAAAGTGCTCTCCATTGCTACTACCTACGAGGTAGCAGAAAAACTCAATGGACGCCCACTCAGCTAT GTGCAGCTAATGCTGCTAGCCAGTTTTATTCCGGAGGACTTACGCAGCCAGCTAGTTAAACCCTACCTGTCCGACGACGG TAACCAGGTACGCATTAGCATACGGGTGATCGATTCCGACAAGAATCTGAACCGCAACGAATTGTTGGCGAAAATCCGCT CCGATCTGGAAAACAACTTCGGCTTGCAGCCGGAACAGGTACACCTCACAGGCGCCATGGTGCTCTACAACAATATGCTG CAAAGCCTGTTCGACTCACAGATTAAAACGTTGGGTTACGTTTTTGCGGCTATCCTGTTCATGCTATTACTCCTGTTCCG CAGCCTCCCCGTGGCTCTGATCAGCATGGTTCCCAGCCTGATCTCCGCCTCCCTGGTGCTAGGTTTGATGGGCTGGATCG GCCTGCCGCTGGATTTAATGACCATTACCATTACCGCCATCTCCATTGGCATCGCCGTGGATGACACCATTCACTACATT CATCGCTTCCATGAAGAGCTGCCAAAAGACCACGACTACGTGGCCACCATGAAGCGCTGTCATGGCTCCATTGGCAAAGC CATGTACTACACTTCGCTTACCATCATTGCCGGCTTCTCCATCCTGGCCCTATCCAGCTTCAACCCCACCGTTTACTTCG GCCTGCTCACCGGCCTGGCGATGCTGGTCGCCCTGCTTAGCAACCTGACCCTGCTACCCGCTTTGCTGATTACAGTAAAA CCGAAACTGAAAGCTGGCTAA
Upstream 100 bases:
>100_bases GCTATGTTCTGATTTTCCCCGCCGTACGATATTTGAATACCGATACTTGAGCATCAGGCCTGCGCTTTTGCCAACCTCTT GAACGTTGACCGGACACACC
Downstream 100 bases:
>100_bases AACCCCGGCGCCCATCACGGGAGCTTGCCTGCAAGCGATTACCACCATCGGTGATCGCTGACAGGCAAGCCTCTCTACCC TTCATATCCTTTTATATCCC
Product: transport protein
Products: NA
Alternate protein names: Exporter Of RND Superfamily Protein-Like Protein; Resistance-Nodulation- Family Transporter; Efflux Transporter Hydrophobe/Amphiphile Efflux-3 Family; Histidine Kinase; Patched Family Protein; Exporter; Sterol-Sensing 5tm Box Domain Protein; Resistance-Nodulation-Cell Division Superfamily Transporter
Number of amino acids: Translated: 886; Mature: 885
Protein sequence:
>886_residues MTHRLFNAYCRAVLAHPVFWLVLLVLICGIAGTQARNFKIDASADSMVLENDSALQYYRKIAKQYGGSDFLVITYSPKDK PLFEQSSLEHLQSLQQALKKVNRVSSVYSMLDVPLLFSPQVEFSDLANEYRTLTSEGVDLSLAEKEFTDKNPLYEDLLVS DDGNTTALLVSFERDQKYFDLLYKRNDLRDLEDNGALDEQGQQELAAASRAFSDYSSQIQQRTAGEIDQVRNIMDGYRNE ANLFLGGVPMITTDLVRFIRSDLKVFGVGVLVFLILTLFLIFRRPRWVIVPLACCGVTVLTVTGWLGWVDWKVSVISSNY ISLLLIITMSITIHLTVRFRELHEENPQASQKWLIRETAAHMMRPSIYMILTTMVGFSSLVISGIRPVIDFGWMMTLGLG ISLIVCFLVFPALLAPLAAGTPRQGRDISRELTLAFAGFTERHRPLLLLLALGVIATSLWGISRLTVENRFIDYFQKDTE IYQGMLQIDRKLGGTTPLDIVIDAPKTTAAQNAALGQPATGWDGASVDDEISDPFASDSANEVDNTDPFADRDPFATDSA DPFADSDPFATESGTDPFASTPEKTKPNPLKGAYWFTPARLGQLVDIQNYLESLPETGKVLSIATTYEVAEKLNGRPLSY VQLMLLASFIPEDLRSQLVKPYLSDDGNQVRISIRVIDSDKNLNRNELLAKIRSDLENNFGLQPEQVHLTGAMVLYNNML QSLFDSQIKTLGYVFAAILFMLLLLFRSLPVALISMVPSLISASLVLGLMGWIGLPLDLMTITITAISIGIAVDDTIHYI HRFHEELPKDHDYVATMKRCHGSIGKAMYYTSLTIIAGFSILALSSFNPTVYFGLLTGLAMLVALLSNLTLLPALLITVK PKLKAG
Sequences:
>Translated_886_residues MTHRLFNAYCRAVLAHPVFWLVLLVLICGIAGTQARNFKIDASADSMVLENDSALQYYRKIAKQYGGSDFLVITYSPKDK PLFEQSSLEHLQSLQQALKKVNRVSSVYSMLDVPLLFSPQVEFSDLANEYRTLTSEGVDLSLAEKEFTDKNPLYEDLLVS DDGNTTALLVSFERDQKYFDLLYKRNDLRDLEDNGALDEQGQQELAAASRAFSDYSSQIQQRTAGEIDQVRNIMDGYRNE ANLFLGGVPMITTDLVRFIRSDLKVFGVGVLVFLILTLFLIFRRPRWVIVPLACCGVTVLTVTGWLGWVDWKVSVISSNY ISLLLIITMSITIHLTVRFRELHEENPQASQKWLIRETAAHMMRPSIYMILTTMVGFSSLVISGIRPVIDFGWMMTLGLG ISLIVCFLVFPALLAPLAAGTPRQGRDISRELTLAFAGFTERHRPLLLLLALGVIATSLWGISRLTVENRFIDYFQKDTE IYQGMLQIDRKLGGTTPLDIVIDAPKTTAAQNAALGQPATGWDGASVDDEISDPFASDSANEVDNTDPFADRDPFATDSA DPFADSDPFATESGTDPFASTPEKTKPNPLKGAYWFTPARLGQLVDIQNYLESLPETGKVLSIATTYEVAEKLNGRPLSY VQLMLLASFIPEDLRSQLVKPYLSDDGNQVRISIRVIDSDKNLNRNELLAKIRSDLENNFGLQPEQVHLTGAMVLYNNML QSLFDSQIKTLGYVFAAILFMLLLLFRSLPVALISMVPSLISASLVLGLMGWIGLPLDLMTITITAISIGIAVDDTIHYI HRFHEELPKDHDYVATMKRCHGSIGKAMYYTSLTIIAGFSILALSSFNPTVYFGLLTGLAMLVALLSNLTLLPALLITVK PKLKAG >Mature_885_residues THRLFNAYCRAVLAHPVFWLVLLVLICGIAGTQARNFKIDASADSMVLENDSALQYYRKIAKQYGGSDFLVITYSPKDKP LFEQSSLEHLQSLQQALKKVNRVSSVYSMLDVPLLFSPQVEFSDLANEYRTLTSEGVDLSLAEKEFTDKNPLYEDLLVSD DGNTTALLVSFERDQKYFDLLYKRNDLRDLEDNGALDEQGQQELAAASRAFSDYSSQIQQRTAGEIDQVRNIMDGYRNEA NLFLGGVPMITTDLVRFIRSDLKVFGVGVLVFLILTLFLIFRRPRWVIVPLACCGVTVLTVTGWLGWVDWKVSVISSNYI SLLLIITMSITIHLTVRFRELHEENPQASQKWLIRETAAHMMRPSIYMILTTMVGFSSLVISGIRPVIDFGWMMTLGLGI SLIVCFLVFPALLAPLAAGTPRQGRDISRELTLAFAGFTERHRPLLLLLALGVIATSLWGISRLTVENRFIDYFQKDTEI YQGMLQIDRKLGGTTPLDIVIDAPKTTAAQNAALGQPATGWDGASVDDEISDPFASDSANEVDNTDPFADRDPFATDSAD PFADSDPFATESGTDPFASTPEKTKPNPLKGAYWFTPARLGQLVDIQNYLESLPETGKVLSIATTYEVAEKLNGRPLSYV QLMLLASFIPEDLRSQLVKPYLSDDGNQVRISIRVIDSDKNLNRNELLAKIRSDLENNFGLQPEQVHLTGAMVLYNNMLQ SLFDSQIKTLGYVFAAILFMLLLLFRSLPVALISMVPSLISASLVLGLMGWIGLPLDLMTITITAISIGIAVDDTIHYIH RFHEELPKDHDYVATMKRCHGSIGKAMYYTSLTIIAGFSILALSSFNPTVYFGLLTGLAMLVALLSNLTLLPALLITVKP KLKAG
Specific function: Unknown
COG id: COG1033
COG function: function code R; Predicted exporters of the RND superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 98452; Mature: 98321
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: PS50156 SSD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHRLFNAYCRAVLAHPVFWLVLLVLICGIAGTQARNFKIDASADSMVLENDSALQYYRK CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEECCCHHHHHHHH IAKQYGGSDFLVITYSPKDKPLFEQSSLEHLQSLQQALKKVNRVSSVYSMLDVPLLFSPQ HHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC VEFSDLANEYRTLTSEGVDLSLAEKEFTDKNPLYEDLLVSDDGNTTALLVSFERDQKYFD CCHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCHHHHEEECCCCCEEEEEEECCCHHHHH LLYKRNDLRDLEDNGALDEQGQQELAAASRAFSDYSSQIQQRTAGEIDQVRNIMDGYRNE HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC ANLFLGGVPMITTDLVRFIRSDLKVFGVGVLVFLILTLFLIFRRPRWVIVPLACCGVTVL CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHH TVTGWLGWVDWKVSVISSNYISLLLIITMSITIHLTVRFRELHEENPQASQKWLIRETAA HHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHEEEEEEEEHHHHCCCCCHHHHHHHHHHHH HMMRPSIYMILTTMVGFSSLVISGIRPVIDFGWMMTLGLGISLIVCFLVFPALLAPLAAG HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TPRQGRDISRELTLAFAGFTERHRPLLLLLALGVIATSLWGISRLTVENRFIDYFQKDTE CCCCCCCHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IYQGMLQIDRKLGGTTPLDIVIDAPKTTAAQNAALGQPATGWDGASVDDEISDPFASDSA HHHHHHHHHHHHCCCCCEEEEEECCCCHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCC NEVDNTDPFADRDPFATDSADPFADSDPFATESGTDPFASTPEKTKPNPLKGAYWFTPAR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECHHH LGQLVDIQNYLESLPETGKVLSIATTYEVAEKLNGRPLSYVQLMLLASFIPEDLRSQLVK HHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHH PYLSDDGNQVRISIRVIDSDKNLNRNELLAKIRSDLENNFGLQPEQVHLTGAMVLYNNML HHHCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHH QSLFDSQIKTLGYVFAAILFMLLLLFRSLPVALISMVPSLISASLVLGLMGWIGLPLDLM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH TITITAISIGIAVDDTIHYIHRFHEELPKDHDYVATMKRCHGSIGKAMYYTSLTIIAGFS HHHHHHHHEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILALSSFNPTVYFGLLTGLAMLVALLSNLTLLPALLITVKPKLKAG HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure THRLFNAYCRAVLAHPVFWLVLLVLICGIAGTQARNFKIDASADSMVLENDSALQYYRK CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCEEECCCHHHHHHHH IAKQYGGSDFLVITYSPKDKPLFEQSSLEHLQSLQQALKKVNRVSSVYSMLDVPLLFSPQ HHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC VEFSDLANEYRTLTSEGVDLSLAEKEFTDKNPLYEDLLVSDDGNTTALLVSFERDQKYFD CCHHHHHHHHHHHHCCCCCEEEHHHHCCCCCCCHHHHEEECCCCCEEEEEEECCCHHHHH LLYKRNDLRDLEDNGALDEQGQQELAAASRAFSDYSSQIQQRTAGEIDQVRNIMDGYRNE HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC ANLFLGGVPMITTDLVRFIRSDLKVFGVGVLVFLILTLFLIFRRPRWVIVPLACCGVTVL CCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHH TVTGWLGWVDWKVSVISSNYISLLLIITMSITIHLTVRFRELHEENPQASQKWLIRETAA HHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHEEEEEEEEHHHHCCCCCHHHHHHHHHHHH HMMRPSIYMILTTMVGFSSLVISGIRPVIDFGWMMTLGLGISLIVCFLVFPALLAPLAAG HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC TPRQGRDISRELTLAFAGFTERHRPLLLLLALGVIATSLWGISRLTVENRFIDYFQKDTE CCCCCCCHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IYQGMLQIDRKLGGTTPLDIVIDAPKTTAAQNAALGQPATGWDGASVDDEISDPFASDSA HHHHHHHHHHHHCCCCCEEEEEECCCCHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCC NEVDNTDPFADRDPFATDSADPFADSDPFATESGTDPFASTPEKTKPNPLKGAYWFTPAR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECHHH LGQLVDIQNYLESLPETGKVLSIATTYEVAEKLNGRPLSYVQLMLLASFIPEDLRSQLVK HHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHH PYLSDDGNQVRISIRVIDSDKNLNRNELLAKIRSDLENNFGLQPEQVHLTGAMVLYNNML HHHCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHH QSLFDSQIKTLGYVFAAILFMLLLLFRSLPVALISMVPSLISASLVLGLMGWIGLPLDLM HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH TITITAISIGIAVDDTIHYIHRFHEELPKDHDYVATMKRCHGSIGKAMYYTSLTIIAGFS HHHHHHHHEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ILALSSFNPTVYFGLLTGLAMLVALLSNLTLLPALLITVKPKLKAG HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA