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The map label for this gene is rsmE [H]

Identifier: 110834247

GI number: 110834247

Start: 1580364

End: 1581080

Strand: Direct

Name: rsmE [H]

Synonym: ABO_1386

Alternate gene names: 110834247

Gene position: 1580364-1581080 (Clockwise)

Preceding gene: 110834244

Following gene: 110834254

Centisome position: 50.65

GC content: 55.65

Gene sequence:

>717_bases
ATGAACTTGCTGCTGCTGCACCCCGACCAATACTTACACGGCAATCGCTGGCGTCTCAATACGCGACAACGTAACCATGT
ATGCAGCGTGCTTAAGCTGGCCGAAGGGCAGCAGTGCCGCGCTGGTGTGCTGGCCGGCAGCACAGGAATAGCCACTATAC
ACGTTATTAAAAACAATGAGATAGAGGTTGAGTTTAAACCAGAATCTAATTCGATTCAGGCGCTACCTCTTTCCTTGCTG
ATGGCACTACCGCGGCCCAAGATGCTCAAACGCATCCTTATCGACGCGACCAGCCTGGGCATCAAGCGCATCGTGCTGAT
CAACAGCTGGAAGGTAGACAAAAGTTACTGGCAGACCCCCAATCTGAAAGCCGACTTGCTTCGCGAGAAAATGATTCTGG
GGTTAGAGCAGGCGCGCGACACCCACTTACCTGAATTAACACTGGCCCCCCGTTTTAAGCCTTTTGTGGAAGATTCACTG
AACGATTGGGCAGGGACAGGCCAGCGTATTCTCGCTCATCCAGGCGATCACCCCGCCCTCCCCTGCAATCTTGCTGAGCC
AGTGACGTTGGCGATAGGCCCAGAAGGGGGCTGGACCGACTACGAGGTAGAGATGCTGCAGCAGCAGGGATTCGCTTGCC
GCAGCTTTGGGGCGCGAATTCTCAGAGTAGAGACAGCGTTGCCGGCCCTGGTCGGCCGGCTGATGAGGCTGCCCTAG

Upstream 100 bases:

>100_bases
CAGTGATTTGCGTCATGCCACGATTCTTCATGCCAGGATAATAGCGAGCCCAGTAAAACCTTTGTTCAGCCGCTTTATCC
CGTATGCCATAATCCGCGCC

Downstream 100 bases:

>100_bases
CAACTTACTCGCAAACGAACCTCGGTGTTTATCGGCAACAATTCGGGTTAGGCTGCAGGCAGTCTCCTACCAAACCAAAC
CAAATCAAACAGTGCGAAAA

Product: 16S ribosomal RNA methyltransferase RsmE

Products: NA

Alternate protein names: 16S rRNA m3U1498 methyltransferase [H]

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MNLLLLHPDQYLHGNRWRLNTRQRNHVCSVLKLAEGQQCRAGVLAGSTGIATIHVIKNNEIEVEFKPESNSIQALPLSLL
MALPRPKMLKRILIDATSLGIKRIVLINSWKVDKSYWQTPNLKADLLREKMILGLEQARDTHLPELTLAPRFKPFVEDSL
NDWAGTGQRILAHPGDHPALPCNLAEPVTLAIGPEGGWTDYEVEMLQQQGFACRSFGARILRVETALPALVGRLMRLP

Sequences:

>Translated_238_residues
MNLLLLHPDQYLHGNRWRLNTRQRNHVCSVLKLAEGQQCRAGVLAGSTGIATIHVIKNNEIEVEFKPESNSIQALPLSLL
MALPRPKMLKRILIDATSLGIKRIVLINSWKVDKSYWQTPNLKADLLREKMILGLEQARDTHLPELTLAPRFKPFVEDSL
NDWAGTGQRILAHPGDHPALPCNLAEPVTLAIGPEGGWTDYEVEMLQQQGFACRSFGARILRVETALPALVGRLMRLP
>Mature_238_residues
MNLLLLHPDQYLHGNRWRLNTRQRNHVCSVLKLAEGQQCRAGVLAGSTGIATIHVIKNNEIEVEFKPESNSIQALPLSLL
MALPRPKMLKRILIDATSLGIKRIVLINSWKVDKSYWQTPNLKADLLREKMILGLEQARDTHLPELTLAPRFKPFVEDSL
NDWAGTGQRILAHPGDHPALPCNLAEPVTLAIGPEGGWTDYEVEMLQQQGFACRSFGARILRVETALPALVGRLMRLP

Specific function: Specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [H]

COG id: COG1385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase RsmE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006700 [H]

Pfam domain/function: PF04452 Methyltrans_RNA [H]

EC number: =2.1.1.193 [H]

Molecular weight: Translated: 26669; Mature: 26669

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLLLHPDQYLHGNRWRLNTRQRNHVCSVLKLAEGQQCRAGVLAGSTGIATIHVIKNNE
CCEEEECCCHHHCCCEEEECCCHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEECCE
IEVEFKPESNSIQALPLSLLMALPRPKMLKRILIDATSLGIKRIVLINSWKVDKSYWQTP
EEEEECCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEEECEECCHHHCCCC
NLKADLLREKMILGLEQARDTHLPELTLAPRFKPFVEDSLNDWAGTGQRILAHPGDHPAL
CCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHCCHHHCCCCCEEEECCCCCCCC
PCNLAEPVTLAIGPEGGWTDYEVEMLQQQGFACRSFGARILRVETALPALVGRLMRLP
CCCCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCEEEEHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNLLLLHPDQYLHGNRWRLNTRQRNHVCSVLKLAEGQQCRAGVLAGSTGIATIHVIKNNE
CCEEEECCCHHHCCCEEEECCCHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEEEEECCE
IEVEFKPESNSIQALPLSLLMALPRPKMLKRILIDATSLGIKRIVLINSWKVDKSYWQTP
EEEEECCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEEECEECCHHHCCCC
NLKADLLREKMILGLEQARDTHLPELTLAPRFKPFVEDSLNDWAGTGQRILAHPGDHPAL
CCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHCCHHHCCCCCEEEECCCCCCCC
PCNLAEPVTLAIGPEGGWTDYEVEMLQQQGFACRSFGARILRVETALPALVGRLMRLP
CCCCCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCEEEEHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]