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The map label for this gene is tnpB [H]

Identifier: 110834216

GI number: 110834216

Start: 1536223

End: 1538337

Strand: Direct

Name: tnpB [H]

Synonym: ABO_1355

Alternate gene names: 110834216

Gene position: 1536223-1538337 (Clockwise)

Preceding gene: 110834215

Following gene: 110834226

Centisome position: 49.24

GC content: 44.4

Gene sequence:

>2115_bases
ATGGATTTAGAGCTGATTTCAAATAATAAAGAAGGCGCTGATTTATATCTGACGCAAATGGAAGCGCGTTTGAATGCTAT
ATCACCAGCACTGGTCCAAGAAAACATATGGAGCAAAACCCTTCTAGAAGAAATTCCCTGTTTTGTGAATGAATATATAG
CCGCCCGAAGTCCTATATCATTTGTTGGGATTCCTGAGACTCCTTCACTGGAGCTCAAGCTCTACTGGGCCAACCTTTTG
TCTGATCCAAGAATGAATTCACAGTCTATAGTTCAAAGAAGAAGGCTCCCAATGAGCTGGCTGATGGAATGCTGCGAAAA
TACGCTACAAAAATTCGAGGTGACATGCATAGCCGACATCCCGCATCCAGAATTTCCACTAAAAGGCTCAATTGGCCCTA
GCAAGAAAGGCCATAACAAAGACCTGATTGCGAGTTTTATATTGTTCGATAAAAAACAGAACCCAAACAGGTCAAAGGTA
AAAATAAACTACACCAAGTCAGGTGAGCTGCAGGAAAAGGAATACACCTCCCCTAATATTACTGTTGTCGGGGACTTCCA
TAAGAAAATAATAATACAGCGCGAGCAGTTTCAAAGCCTAAGAAAACGGAATGTGTTGCTCCTCGATGATTTGTATTCCG
AGTATCACGTGAGATATAAGGACCTCCAAAAGCAAAAAAGCAGCTACGTCAATCTATTCCAGTTTCCGGAGTGGTTAAGG
GATGCTGTCAGAGAGCATATTCTCGACAAAATCAGTCACGATGAACTCGGACCCAAAACGCTGCCGGGCTATGTTGGGCG
GTTTAAGCATTTTAGCAATTTCATGCATGAGACATTCGAGCGGCCATCTCCCAGTTCAATAACGGATGTTCTTATTGGTG
ATATGTTTGTTGATTGGGGGAACGCAAAAGGCTTGTATGGCAGAAACTGGTATACTGACACACTGGCTATGCTGGCTACA
GCAGCCAGGAAGTGGCCTGACATTTGGCCTGGCTTAACTGTTTCAGCTCGATCTTCGAAGAAAATTAAGAATGTGCATTA
TAAAGAAGGTCTTGGAAGGTTGGGTTATGCGCAGGAAGGCGGTGGCCGTGCTTACTCTCAGAGAATTGTTGATGAGCTCT
ATTCCGCAGTAAAGCATGCGCCCTCACCTACCCCATGTGTTTTTACTTTGATAATGGGGGCTGGCATGAGATCTGAGGAT
GGCCATGCCATTTTGTTTGACTGTCTAGATGAAGACCCGAACGACGCAGATTTCATGCTGCTTACATTCTGGCAGAGCAA
AGTTAGCAAGTGGAATGTAAAGCCTTTGCACAAGAATAATAAAGACCATGCTCAGATAATTAACGCTATTGAAGAGCAAC
GGTCTGCAGTTATTAAACGACACGGAAAGAAGACCAAATACCTTTTCCCTGTATTCAATGGCACTCATGAAAGCTTTACA
TCGCCCACCTACACTATGGGCGAAATAAAAAAACAATGCGTAAGCGCTGGTGTATTGTCTGATGACGGGTCCCCTCTTTC
ATTTTCCTGGCATCCTCTGAGGCATACCAAAGGCACCTCAATGGCCAAAGATGGCCATGACATATTATCGATTATGATGG
AGCTTGGCCATGCCAGTCCTGACATGGCCACCGTATATATAAACAACCGGCTTGAGCTCAAGAAAAAAGCTCTTCTGCAA
AATGGCGGCGGCCGCTTTTACACAATTGAAGGGGAGGTAGATGAAAGCGTAGCCAACCTCCTCGTAAGAAAAGGTCAGAT
AAGAGCTACACGGGTGTGTGGCGGGGCTTGCACTATGCCTGCTCAAATTGGTGATTGGTGTGAGCATGCGAATGCTTGCT
ATACATGCAAACATTACCGCGCTGACGCCAAAGATGTAGATTTCTTTAAGAATGAGAAAGGCGCAGTAATTAATCTGATT
GAAGAGCAGCAAGAAGAGCTTGTGGCTTTGCAGGAGAATCAGCAAAGTCGTATGTCTGAAATTACAGGCCGCAGACTTGC
TAAAAACAAGGAAATATACAAGCGGCTTAATGACATAGTTTCTTCGATTGAAGCTGATGGCCAGTATCAAGGTCGTGAGC
AACAAGCGCGCAAAACCTCACTGGAGGATAAATGA

Upstream 100 bases:

>100_bases
GTGAAGTCCGAAAATTACATCTGACCGGCCCAAGCAAGCTGAAGGAGCGGCTTGATGAATTTATGGAATCTGGCGCGCAA
TTGACTGAGCGAGGCATTAA

Downstream 100 bases:

>100_bases
GTGAAGACAACCTTGATGGTTTGCGTCAGGCCAGGGATGAGCGCAGCCTTCAAAAGCGTAGAGCCGTCGAGCAAGCGGTT
GATCAATTGAAGCAGAGCAA

Product: transposon protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 704; Mature: 704

Protein sequence:

>704_residues
MDLELISNNKEGADLYLTQMEARLNAISPALVQENIWSKTLLEEIPCFVNEYIAARSPISFVGIPETPSLELKLYWANLL
SDPRMNSQSIVQRRRLPMSWLMECCENTLQKFEVTCIADIPHPEFPLKGSIGPSKKGHNKDLIASFILFDKKQNPNRSKV
KINYTKSGELQEKEYTSPNITVVGDFHKKIIIQREQFQSLRKRNVLLLDDLYSEYHVRYKDLQKQKSSYVNLFQFPEWLR
DAVREHILDKISHDELGPKTLPGYVGRFKHFSNFMHETFERPSPSSITDVLIGDMFVDWGNAKGLYGRNWYTDTLAMLAT
AARKWPDIWPGLTVSARSSKKIKNVHYKEGLGRLGYAQEGGGRAYSQRIVDELYSAVKHAPSPTPCVFTLIMGAGMRSED
GHAILFDCLDEDPNDADFMLLTFWQSKVSKWNVKPLHKNNKDHAQIINAIEEQRSAVIKRHGKKTKYLFPVFNGTHESFT
SPTYTMGEIKKQCVSAGVLSDDGSPLSFSWHPLRHTKGTSMAKDGHDILSIMMELGHASPDMATVYINNRLELKKKALLQ
NGGGRFYTIEGEVDESVANLLVRKGQIRATRVCGGACTMPAQIGDWCEHANACYTCKHYRADAKDVDFFKNEKGAVINLI
EEQQEELVALQENQQSRMSEITGRRLAKNKEIYKRLNDIVSSIEADGQYQGREQQARKTSLEDK

Sequences:

>Translated_704_residues
MDLELISNNKEGADLYLTQMEARLNAISPALVQENIWSKTLLEEIPCFVNEYIAARSPISFVGIPETPSLELKLYWANLL
SDPRMNSQSIVQRRRLPMSWLMECCENTLQKFEVTCIADIPHPEFPLKGSIGPSKKGHNKDLIASFILFDKKQNPNRSKV
KINYTKSGELQEKEYTSPNITVVGDFHKKIIIQREQFQSLRKRNVLLLDDLYSEYHVRYKDLQKQKSSYVNLFQFPEWLR
DAVREHILDKISHDELGPKTLPGYVGRFKHFSNFMHETFERPSPSSITDVLIGDMFVDWGNAKGLYGRNWYTDTLAMLAT
AARKWPDIWPGLTVSARSSKKIKNVHYKEGLGRLGYAQEGGGRAYSQRIVDELYSAVKHAPSPTPCVFTLIMGAGMRSED
GHAILFDCLDEDPNDADFMLLTFWQSKVSKWNVKPLHKNNKDHAQIINAIEEQRSAVIKRHGKKTKYLFPVFNGTHESFT
SPTYTMGEIKKQCVSAGVLSDDGSPLSFSWHPLRHTKGTSMAKDGHDILSIMMELGHASPDMATVYINNRLELKKKALLQ
NGGGRFYTIEGEVDESVANLLVRKGQIRATRVCGGACTMPAQIGDWCEHANACYTCKHYRADAKDVDFFKNEKGAVINLI
EEQQEELVALQENQQSRMSEITGRRLAKNKEIYKRLNDIVSSIEADGQYQGREQQARKTSLEDK
>Mature_704_residues
MDLELISNNKEGADLYLTQMEARLNAISPALVQENIWSKTLLEEIPCFVNEYIAARSPISFVGIPETPSLELKLYWANLL
SDPRMNSQSIVQRRRLPMSWLMECCENTLQKFEVTCIADIPHPEFPLKGSIGPSKKGHNKDLIASFILFDKKQNPNRSKV
KINYTKSGELQEKEYTSPNITVVGDFHKKIIIQREQFQSLRKRNVLLLDDLYSEYHVRYKDLQKQKSSYVNLFQFPEWLR
DAVREHILDKISHDELGPKTLPGYVGRFKHFSNFMHETFERPSPSSITDVLIGDMFVDWGNAKGLYGRNWYTDTLAMLAT
AARKWPDIWPGLTVSARSSKKIKNVHYKEGLGRLGYAQEGGGRAYSQRIVDELYSAVKHAPSPTPCVFTLIMGAGMRSED
GHAILFDCLDEDPNDADFMLLTFWQSKVSKWNVKPLHKNNKDHAQIINAIEEQRSAVIKRHGKKTKYLFPVFNGTHESFT
SPTYTMGEIKKQCVSAGVLSDDGSPLSFSWHPLRHTKGTSMAKDGHDILSIMMELGHASPDMATVYINNRLELKKKALLQ
NGGGRFYTIEGEVDESVANLLVRKGQIRATRVCGGACTMPAQIGDWCEHANACYTCKHYRADAKDVDFFKNEKGAVINLI
EEQQEELVALQENQQSRMSEITGRRLAKNKEIYKRLNDIVSSIEADGQYQGREQQARKTSLEDK

Specific function: One of three proteins encoded by transposon Tn554 required for its transposition [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 80115; Mature: 80115

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLELISNNKEGADLYLTQMEARLNAISPALVQENIWSKTLLEEIPCFVNEYIAARSPIS
CCCEEECCCCCCCCEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
FVGIPETPSLELKLYWANLLSDPRMNSQSIVQRRRLPMSWLMECCENTLQKFEVTCIADI
EEECCCCCCEEEEEEEHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHEEEEEEEEC
PHPEFPLKGSIGPSKKGHNKDLIASFILFDKKQNPNRSKVKINYTKSGELQEKEYTSPNI
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHCCCCCE
TVVGDFHKKIIIQREQFQSLRKRNVLLLDDLYSEYHVRYKDLQKQKSSYVNLFQFPEWLR
EEEECCHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DAVREHILDKISHDELGPKTLPGYVGRFKHFSNFMHETFERPSPSSITDVLIGDMFVDWG
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECC
NAKGLYGRNWYTDTLAMLATAARKWPDIWPGLTVSARSSKKIKNVHYKEGLGRLGYAQEG
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCCCCCC
GGRAYSQRIVDELYSAVKHAPSPTPCVFTLIMGAGMRSEDGHAILFDCLDEDPNDADFML
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCEEE
LTFWQSKVSKWNVKPLHKNNKDHAQIINAIEEQRSAVIKRHGKKTKYLFPVFNGTHESFT
EEEHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHCC
SPTYTMGEIKKQCVSAGVLSDDGSPLSFSWHPLRHTKGTSMAKDGHDILSIMMELGHASP
CCCCCHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
DMATVYINNRLELKKKALLQNGGGRFYTIEGEVDESVANLLVRKGQIRATRVCGGACTMP
CEEEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCC
AQIGDWCEHANACYTCKHYRADAKDVDFFKNEKGAVINLIEEQQEELVALQENQQSRMSE
HHHHHHHHHCCCEEEEHHHCCCCCCCHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
ITGRRLAKNKEIYKRLNDIVSSIEADGQYQGREQQARKTSLEDK
HHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCC
>Mature Secondary Structure
MDLELISNNKEGADLYLTQMEARLNAISPALVQENIWSKTLLEEIPCFVNEYIAARSPIS
CCCEEECCCCCCCCEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
FVGIPETPSLELKLYWANLLSDPRMNSQSIVQRRRLPMSWLMECCENTLQKFEVTCIADI
EEECCCCCCEEEEEEEHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHEEEEEEEEC
PHPEFPLKGSIGPSKKGHNKDLIASFILFDKKQNPNRSKVKINYTKSGELQEKEYTSPNI
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHCCCCCE
TVVGDFHKKIIIQREQFQSLRKRNVLLLDDLYSEYHVRYKDLQKQKSSYVNLFQFPEWLR
EEEECCHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DAVREHILDKISHDELGPKTLPGYVGRFKHFSNFMHETFERPSPSSITDVLIGDMFVDWG
HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHEECC
NAKGLYGRNWYTDTLAMLATAARKWPDIWPGLTVSARSSKKIKNVHYKEGLGRLGYAQEG
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHCCCCCCCCCCC
GGRAYSQRIVDELYSAVKHAPSPTPCVFTLIMGAGMRSEDGHAILFDCLDEDPNDADFML
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCEEE
LTFWQSKVSKWNVKPLHKNNKDHAQIINAIEEQRSAVIKRHGKKTKYLFPVFNGTHESFT
EEEHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHCC
SPTYTMGEIKKQCVSAGVLSDDGSPLSFSWHPLRHTKGTSMAKDGHDILSIMMELGHASP
CCCCCHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
DMATVYINNRLELKKKALLQNGGGRFYTIEGEVDESVANLLVRKGQIRATRVCGGACTMP
CEEEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCCCCC
AQIGDWCEHANACYTCKHYRADAKDVDFFKNEKGAVINLIEEQQEELVALQENQQSRMSE
HHHHHHHHHCCCEEEEHHHCCCCCCCHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
ITGRRLAKNKEIYKRLNDIVSSIEADGQYQGREQQARKTSLEDK
HHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]