| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is yhiQ [C]
Identifier: 110833992
GI number: 110833992
Start: 1282880
End: 1283623
Strand: Direct
Name: yhiQ [C]
Synonym: ABO_1131
Alternate gene names: 110833992
Gene position: 1282880-1283623 (Clockwise)
Preceding gene: 110833991
Following gene: 110833994
Centisome position: 41.12
GC content: 57.8
Gene sequence:
>744_bases ATGAGGCAGAGTGAGTGGTTGGACACTGTGCTTGGGTTATTACCCGGTTGCCCGAAAGGTCTTCCGGGTTTCTGGGTTGA AAATGAAGCCCAGGCCAGTGGGCAGGCGCTTGAGCTGGTGCTTGGCTGGCATGATGATTGCCTGGGCCTGTGGCGTCCCG GTGGCAAGCAAACGCCGCTGACGGTCAGTTTCTGTGACGGCAAGCAGGGGTACCGACTCACCCCCGAGCGGGTGCGCCAT GAGCGTCTGATTAAGGCGCTGGGCAAGCCCAAAGACGATCGGATCCGGGTGCTTGACGCCACGGCGGGGCTTGGCAGGGA TGCGGCCCTGATGGCACAGGCAGGGTTTCAGGTGATGCTGGCAGAACGTTCGCCGATTCTTCACGCGATGCTTGCTGATG GTCTGCAAAGGGCTCCTGCCAGCCTTGTTGCGAACATGCAGTTGCTGGCGTGCGCAGACAGCAAAATTGCTGAGCCATCT GCTCTCCACGCGGTGTACCTAGATCCCATGTTTCCCGCTCGGGAAAAAAGTGCGGCGGTTAAAAAAGACCTGCAGTGGTT GCAGCGGCTTTGTCCTTACCCGGATGAAGTTGAGGAACAGCAATTACTGGATTGGGCGCGTGCCCTTGGCGCTTCTCGGG TGGTTGTCAAACGCCCGGTAAAGGCGGGTTTTTTAGCTGGCGTAACACCGTCTTTTAGTCAAAAGGGCAAGGCGGTACGT TTTGATATTTATACCTGCCCCTGA
Upstream 100 bases:
>100_bases TGACCATTGTATTCTTCATTCGCTTGTTGGAGCGCGTTGGCATGCTGCCGTTTGTGGTCTATCGGTTGATACTCGGTGTG GCCCTGTTGTTCTGGTTGGC
Downstream 100 bases:
>100_bases GCACAACCCTACAGGTAATGACGGTCGATTCTTTTGGGAAGACACCGGCCACCCACAAGAGATGGCCGGAGATGTTTAAT TTGCTTCAGATGACGCAGTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 247; Mature: 247
Protein sequence:
>247_residues MRQSEWLDTVLGLLPGCPKGLPGFWVENEAQASGQALELVLGWHDDCLGLWRPGGKQTPLTVSFCDGKQGYRLTPERVRH ERLIKALGKPKDDRIRVLDATAGLGRDAALMAQAGFQVMLAERSPILHAMLADGLQRAPASLVANMQLLACADSKIAEPS ALHAVYLDPMFPAREKSAAVKKDLQWLQRLCPYPDEVEEQQLLDWARALGASRVVVKRPVKAGFLAGVTPSFSQKGKAVR FDIYTCP
Sequences:
>Translated_247_residues MRQSEWLDTVLGLLPGCPKGLPGFWVENEAQASGQALELVLGWHDDCLGLWRPGGKQTPLTVSFCDGKQGYRLTPERVRH ERLIKALGKPKDDRIRVLDATAGLGRDAALMAQAGFQVMLAERSPILHAMLADGLQRAPASLVANMQLLACADSKIAEPS ALHAVYLDPMFPAREKSAAVKKDLQWLQRLCPYPDEVEEQQLLDWARALGASRVVVKRPVKAGFLAGVTPSFSQKGKAVR FDIYTCP >Mature_247_residues MRQSEWLDTVLGLLPGCPKGLPGFWVENEAQASGQALELVLGWHDDCLGLWRPGGKQTPLTVSFCDGKQGYRLTPERVRH ERLIKALGKPKDDRIRVLDATAGLGRDAALMAQAGFQVMLAERSPILHAMLADGLQRAPASLVANMQLLACADSKIAEPS ALHAVYLDPMFPAREKSAAVKKDLQWLQRLCPYPDEVEEQQLLDWARALGASRVVVKRPVKAGFLAGVTPSFSQKGKAVR FDIYTCP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0341 family
Homologues:
Organism=Escherichia coli, GI1789912, Length=193, Percent_Identity=40.4145077720207, Blast_Score=103, Evalue=8e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y1131_ALCBS (Q0VQG9)
Other databases:
- EMBL: AM286690 - RefSeq: YP_692851.1 - ProteinModelPortal: Q0VQG9 - SMR: Q0VQG9 - STRING: Q0VQG9 - GeneID: 4212418 - GenomeReviews: AM286690_GR - KEGG: abo:ABO_1131 - NMPDR: fig|393595.12.peg.1141 - eggNOG: COG0500 - HOGENOM: HBG563235 - OMA: ISHIENI - PhylomeDB: Q0VQG9 - BioCyc: ABOR393595:ABO_1131-MONOMER - HAMAP: MF_01523 - InterPro: IPR007536
Pfam domain/function: PF04445 DUF548
EC number: NA
Molecular weight: Translated: 27096; Mature: 27096
Theoretical pI: Translated: 8.60; Mature: 8.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRQSEWLDTVLGLLPGCPKGLPGFWVENEAQASGQALELVLGWHDDCLGLWRPGGKQTPL CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHCCCCCCCCCE TVSFCDGKQGYRLTPERVRHERLIKALGKPKDDRIRVLDATAGLGRDAALMAQAGFQVML EEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEE AERSPILHAMLADGLQRAPASLVANMQLLACADSKIAEPSALHAVYLDPMFPAREKSAAV ECCCCHHHHHHHHHHHHCCHHHHHCCHHEEECCCCCCCCCCEEEEEECCCCCCHHHHHHH KKDLQWLQRLCPYPDEVEEQQLLDWARALGASRVVVKRPVKAGFLAGVTPSFSQKGKAVR HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEECCCHHHHHCCCCCCHHCCCCEEE FDIYTCP EEEEECC >Mature Secondary Structure MRQSEWLDTVLGLLPGCPKGLPGFWVENEAQASGQALELVLGWHDDCLGLWRPGGKQTPL CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHCCCCCCCCCE TVSFCDGKQGYRLTPERVRHERLIKALGKPKDDRIRVLDATAGLGRDAALMAQAGFQVML EEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHCCCEEEE AERSPILHAMLADGLQRAPASLVANMQLLACADSKIAEPSALHAVYLDPMFPAREKSAAV ECCCCHHHHHHHHHHHHCCHHHHHCCHHEEECCCCCCCCCCEEEEEECCCCCCHHHHHHH KKDLQWLQRLCPYPDEVEEQQLLDWARALGASRVVVKRPVKAGFLAGVTPSFSQKGKAVR HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEECCCHHHHHCCCCCCHHCCCCEEE FDIYTCP EEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA