Definition Alcanivorax borkumensis SK2 chromosome, complete genome.
Accession NC_008260
Length 3,120,143

Click here to switch to the map view.

The map label for this gene is 110833836

Identifier: 110833836

GI number: 110833836

Start: 1101239

End: 1101559

Strand: Direct

Name: 110833836

Synonym: ABO_0975

Alternate gene names: NA

Gene position: 1101239-1101559 (Clockwise)

Preceding gene: 110833835

Following gene: 110833838

Centisome position: 35.29

GC content: 53.27

Gene sequence:

>321_bases
ATGTCAGTTACATGGATTGTCGCGTCGGCACTACTCAGTTCTTTTTGTACTCTGCTGGTTGTCGGTGTATGGGCGAATTT
TTATTTTCAGCCCCGTTTACGTGACAGCTTGCAACGGGAGCTGGATGAGCAGGTGGAAAAAGCGGCGCAGGTTCTTTCGG
ATCGAGTGGAAGACGGGGTTCGACGAGGGCTGGCGGAAGGCGTGCGTAACTTGCCGTCTAAAGAGTTACTGGAAGGCGCT
AGTCGTAACTTGGCACGTAGCAGTGCGGAAATGGTGGGTGAGCGCCTGGGGAATATTTTCGGACGCAAGGACAAACCCTG
A

Upstream 100 bases:

>100_bases
ATACTCTTATACAGCGCAACTTAACAATAATGCCGGCCCCCTTATACACGTGGTTGCTTTAGGCCGGGGCCTGAATCGGG
ACCACGCAGAGGAAGAAATC

Downstream 100 bases:

>100_bases
CCCGTACTTGGTTCGCTATGCCTATGTTTTATAATGTCCGGCTTTTAAGGGAGCCGTTTAGGAAGTAACCGGACCACCAA
GCAGGCAATGCCAAGGCTAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 105

Protein sequence:

>106_residues
MSVTWIVASALLSSFCTLLVVGVWANFYFQPRLRDSLQRELDEQVEKAAQVLSDRVEDGVRRGLAEGVRNLPSKELLEGA
SRNLARSSAEMVGERLGNIFGRKDKP

Sequences:

>Translated_106_residues
MSVTWIVASALLSSFCTLLVVGVWANFYFQPRLRDSLQRELDEQVEKAAQVLSDRVEDGVRRGLAEGVRNLPSKELLEGA
SRNLARSSAEMVGERLGNIFGRKDKP
>Mature_105_residues
SVTWIVASALLSSFCTLLVVGVWANFYFQPRLRDSLQRELDEQVEKAAQVLSDRVEDGVRRGLAEGVRNLPSKELLEGAS
RNLARSSAEMVGERLGNIFGRKDKP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11807; Mature: 11675

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVTWIVASALLSSFCTLLVVGVWANFYFQPRLRDSLQRELDEQVEKAAQVLSDRVEDGV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRGLAEGVRNLPSKELLEGASRNLARSSAEMVGERLGNIFGRKDKP
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SVTWIVASALLSSFCTLLVVGVWANFYFQPRLRDSLQRELDEQVEKAAQVLSDRVEDGV
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRGLAEGVRNLPSKELLEGASRNLARSSAEMVGERLGNIFGRKDKP
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA