| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is yeeO [C]
Identifier: 110833800
GI number: 110833800
Start: 1052518
End: 1053798
Strand: Direct
Name: yeeO [C]
Synonym: ABO_0939
Alternate gene names: 110833800
Gene position: 1052518-1053798 (Clockwise)
Preceding gene: 110833799
Following gene: 110833801
Centisome position: 33.73
GC content: 46.21
Gene sequence:
>1281_bases ATGCTCAAATCAGTTTTATATAAAAACTTCTTATCTGTAGGTGGGATGCGTCTTGCGGGGATTCCCCTGACATTGGCAAC CAGTGTGTTGTTGGCCAGGCTGCTTGGACCAGAGGGATACGGTTACTACTCTTTTGCGATGGCATTGGTTCCTTTGCTTG CGATTCCTGTGTCCAGTGGTTTGCAGCAGTTTGCGACACGGCAAGTAGTTAGCTATCGGTTGGCCGAACAATTTTCTCTG GCAAGGGGACTGGTGTCTCTGGCAGGGATGTGGATATTGCTTTATTCCGTTCTTGTGTTTGTTTTTTTTCTGGTCGCTAG TCAGCTTTTTCCTGAGATCTTTGAAGAAAAAAAATGGGCTATCATGCTCATTGCCATCTTTATTATCCCCTTTATTGGTG GTAACTCAGTGCGATGTGGTATGTCCAAGGCTCTGGGGCAGCCTTTTTGGTCCGAGCTGCCACTAAGACTGATCCAACCC GCTCTGCTTCTTGGGATAGTTGTTCTGCTTTATCTCTGGGGGATTAAGGGTGCAAACTTCGCCATTTATGCTCAGCTAAT AAGTTTCTCTTTGGCATTTATCATTGCAGTAATAATCTTTGTACTTGTAGCGCCTGCGGATATGCGGGAGGGCAATAGGA CTTATGAAATAGGCTTCTGGGCGCGCTCTCTGATTCCATTTAGCCTTTTATCTGCGGTTACATTGCTCGGAGCGCAAATT TCCATTGTACTTCTAGGGATTCTCGGTGAACCTGAAGCCGTAGCTGGAATGAGGGTGGCTGACCGTGGTGCCGCGCTTGT GCTTCTTCCATTGACCACAGTTAACATGATTGTCGCACCGTATATTGCTCGTTATTTCAAGCAAGGTGACCGAGAAAAAC TGCAAGCTACCTTAAGACTGTCTTCCAGGTTGGCACTTTTGTTTGCATTACCTGCGGCGAGTCTGTTTCTCTTTTTTGGT GAGCAGATAGTCGGCCTTGTTTTTGGTCTTGAATATATTGCGTACGCATTTTGGCCACTAGTGATTCTTTCTGCGAGCCA ATTGTTCAGTGTTTTTTGTGGTTCGGTTGGCAATGTGTTGGCAATGAGTCATCAGGAAAATAGGGCCGTTACCGGTCATA TTCTGGCATTGAGCGTCAATGTGATTCTGTGCTTTTTTTTGATTCCGACGTATGGTGCTGTGGGAGCTGCATTGGCTACT GGAGCAGGATTGATCGTCTGGAATCTGGTGCTGGCTTACTTCGTGATTAAACAGGTAAAGGTAAGCCCCTTTCCTATTTA G
Upstream 100 bases:
>100_bases CCTGAAGGGTATGGCGAGAGATAGGGAGCTATCGCTGACTGAATGAGTGCTTTCCAAGCTTCTGTTTTACGGTTCTATAT AAAGAGAGTGGGTTGGGAAC
Downstream 100 bases:
>100_bases TTTTATCCTGAAGGCTGAAGGAATACGCGGAGGTTTTTTGATTATCAAATACAGGGTTGTTCACCGAGTCTCTATAAAAG AGGCGCTGGTCATTTATTCG
Product: cell surface polysaccharide transporter
Products: NA
Alternate protein names: Polysaccharide Export Protein Translocase; Cell Surface Polysaccharide Transporter
Number of amino acids: Translated: 426; Mature: 426
Protein sequence:
>426_residues MLKSVLYKNFLSVGGMRLAGIPLTLATSVLLARLLGPEGYGYYSFAMALVPLLAIPVSSGLQQFATRQVVSYRLAEQFSL ARGLVSLAGMWILLYSVLVFVFFLVASQLFPEIFEEKKWAIMLIAIFIIPFIGGNSVRCGMSKALGQPFWSELPLRLIQP ALLLGIVVLLYLWGIKGANFAIYAQLISFSLAFIIAVIIFVLVAPADMREGNRTYEIGFWARSLIPFSLLSAVTLLGAQI SIVLLGILGEPEAVAGMRVADRGAALVLLPLTTVNMIVAPYIARYFKQGDREKLQATLRLSSRLALLFALPAASLFLFFG EQIVGLVFGLEYIAYAFWPLVILSASQLFSVFCGSVGNVLAMSHQENRAVTGHILALSVNVILCFFLIPTYGAVGAALAT GAGLIVWNLVLAYFVIKQVKVSPFPI
Sequences:
>Translated_426_residues MLKSVLYKNFLSVGGMRLAGIPLTLATSVLLARLLGPEGYGYYSFAMALVPLLAIPVSSGLQQFATRQVVSYRLAEQFSL ARGLVSLAGMWILLYSVLVFVFFLVASQLFPEIFEEKKWAIMLIAIFIIPFIGGNSVRCGMSKALGQPFWSELPLRLIQP ALLLGIVVLLYLWGIKGANFAIYAQLISFSLAFIIAVIIFVLVAPADMREGNRTYEIGFWARSLIPFSLLSAVTLLGAQI SIVLLGILGEPEAVAGMRVADRGAALVLLPLTTVNMIVAPYIARYFKQGDREKLQATLRLSSRLALLFALPAASLFLFFG EQIVGLVFGLEYIAYAFWPLVILSASQLFSVFCGSVGNVLAMSHQENRAVTGHILALSVNVILCFFLIPTYGAVGAALAT GAGLIVWNLVLAYFVIKQVKVSPFPI >Mature_426_residues MLKSVLYKNFLSVGGMRLAGIPLTLATSVLLARLLGPEGYGYYSFAMALVPLLAIPVSSGLQQFATRQVVSYRLAEQFSL ARGLVSLAGMWILLYSVLVFVFFLVASQLFPEIFEEKKWAIMLIAIFIIPFIGGNSVRCGMSKALGQPFWSELPLRLIQP ALLLGIVVLLYLWGIKGANFAIYAQLISFSLAFIIAVIIFVLVAPADMREGNRTYEIGFWARSLIPFSLLSAVTLLGAQI SIVLLGILGEPEAVAGMRVADRGAALVLLPLTTVNMIVAPYIARYFKQGDREKLQATLRLSSRLALLFALPAASLFLFFG EQIVGLVFGLEYIAYAFWPLVILSASQLFSVFCGSVGNVLAMSHQENRAVTGHILALSVNVILCFFLIPTYGAVGAALAT GAGLIVWNLVLAYFVIKQVKVSPFPI
Specific function: Unknown
COG id: COG2244
COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46332; Mature: 46332
Theoretical pI: Translated: 9.82; Mature: 9.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKSVLYKNFLSVGGMRLAGIPLTLATSVLLARLLGPEGYGYYSFAMALVPLLAIPVSSG CCHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH LQQFATRQVVSYRLAEQFSLARGLVSLAGMWILLYSVLVFVFFLVASQLFPEIFEEKKWA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH IMLIAIFIIPFIGGNSVRCGMSKALGQPFWSELPLRLIQPALLLGIVVLLYLWGIKGANF HHHHHHHHHHHCCCCCCCCCHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCH AIYAQLISFSLAFIIAVIIFVLVAPADMREGNRTYEIGFWARSLIPFSLLSAVTLLGAQI HHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH SIVLLGILGEPEAVAGMRVADRGAALVLLPLTTVNMIVAPYIARYFKQGDREKLQATLRL HHHHHHHCCCCCHHHCCEEECCCCEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH SSRLALLFALPAASLFLFFGEQIVGLVFGLEYIAYAFWPLVILSASQLFSVFCGSVGNVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH AMSHQENRAVTGHILALSVNVILCFFLIPTYGAVGAALATGAGLIVWNLVLAYFVIKQVK EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC VSPFPI CCCCCC >Mature Secondary Structure MLKSVLYKNFLSVGGMRLAGIPLTLATSVLLARLLGPEGYGYYSFAMALVPLLAIPVSSG CCHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH LQQFATRQVVSYRLAEQFSLARGLVSLAGMWILLYSVLVFVFFLVASQLFPEIFEEKKWA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH IMLIAIFIIPFIGGNSVRCGMSKALGQPFWSELPLRLIQPALLLGIVVLLYLWGIKGANF HHHHHHHHHHHCCCCCCCCCHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCH AIYAQLISFSLAFIIAVIIFVLVAPADMREGNRTYEIGFWARSLIPFSLLSAVTLLGAQI HHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH SIVLLGILGEPEAVAGMRVADRGAALVLLPLTTVNMIVAPYIARYFKQGDREKLQATLRL HHHHHHHCCCCCHHHCCEEECCCCEEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH SSRLALLFALPAASLFLFFGEQIVGLVFGLEYIAYAFWPLVILSASQLFSVFCGSVGNVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH AMSHQENRAVTGHILALSVNVILCFFLIPTYGAVGAALATGAGLIVWNLVLAYFVIKQVK EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC VSPFPI CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA