| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is wbpM [H]
Identifier: 110833789
GI number: 110833789
Start: 1037654
End: 1039543
Strand: Direct
Name: wbpM [H]
Synonym: ABO_0928
Alternate gene names: 110833789
Gene position: 1037654-1039543 (Clockwise)
Preceding gene: 110833788
Following gene: 110833790
Centisome position: 33.26
GC content: 56.88
Gene sequence:
>1890_bases ATGGTAATGCTGGGTGCTGATGCAGTCGCCGCCCCCCTATTACTCTGGCTTGCCTATGGCTTGCGCCTCAATACCGCCGC CCCGGAAGTGGCCGACCTATGGTTGCTGATGGCTACGCCGTTGGTGGTGCTGCCGGTGCTATATGCGTTCGGTTTTTACC GTTCGGTTGTGCGTTACCTAGGGGCTGAAGTGGCGTGGTCTATCCTGTTTGGGGCGACTCTTTCGGTGGTGCTGCTGGCG GCGACGACTTATATGGTATCGGGCTCTACCCCGCGTTCAGTGTTTATTATTTTCTGGGCGTTGCTAGTGCTATACCTAGG GGGCAGCCGCTTTATGATGCGCCGTTTCCTTTATAACGTGCTAGGTAAGCATACTTTGCGTGAAGCGGTGGCGGTATTCG GTGCTGGTGGAGCGGGGGCTCAGCTGGTGTCTGGGTTATTGTCTTCCACCGAGTTGCGCCCGCTGATGATAGTGGACGAT GCGCCCGGTAAACAGGGGATGTTGCTTTGCGGTGTGCCGGTGGTGGGGCGGCGCGCTTTGGAAAAAGCGGTAGAACGGGG GGCTATTCGTACGGTGTTACTGGCTCTGCCGTCTGAGAGCCGGGCGACACGGATGGCAGTGGTGCGCTGGCTGGAAACCC TGAATGTGCATGTGCAGACGGTGCCTTCGTTTGCGGATATTGCTAGCGGCAAGGCGCGGCTTGAAGAAGTCAAAGACGTG TCTATCGAAGACTTGCTGGGCCGTGACCCGGTGCCCCCCCGCGCGGATTTACTGTCGCGCTGTATTAGTGGTAAGCATGT TCTGGTGACGGGCGCGGCGGGCTCCATTGGTAGCGAGCTTTGTCGCCAGATTCTTAAGTTGAACCCTTCCCGCTTGGTGT TGCTCGATCAAAGTGAATTTGGCCTATATGCCATTGAGAAAGAATTGCGAGCAACGGCGGACAGCCTTGGTAAAAGCGTC GAAATTGAGGCGGTGCTCGGTTCAGTGGTGAACCGGGGCTTGATGGAGCGGCTTTGCAGTGACCAACGGGTGGATACGGT GTACCACGCCGCAGCGTACAAGCATGTGCCGATTGTGGAGGCTAACCCTACGGCTGGAGTGCGCAATAATATCTTGGGGA CGCTGGAGGCCGCACTGGGAGCAGAAGCTGCTCATGTGAAGCACTTTATTCTTGTGTCCACGGATAAGGCTGTTCGCCCA ACTAACGTGATGGGGGCCACTAAGCGTTTTGCAGAACTGGTGCTCCAGGCCATAGCCGCTAGGGGTTCGGACACCGTGTT CTCGATGGTACGTTTTGGCAACGTGCTTGGCTCGTCTGGTTCGGTGGTGCCCTTGTTCCGTGACCAGATTCGTAAAGGCG GCCCGGTAACGGTGACCCACCCGGATGTGATTCGCTATTTTATGACCATCCCTGAAGCGTCCCAGTTAGTGATTCAGGCG GGTGCCATGGCCCAGGGCGGCGAAGTATTCGTGTTGGATATGGGTGAGCCGGTGCGAATTGTTGACTTGGCCCGCACCAT GGTGCATTTGATGGGGATGACGGTGCGCGATGAGAAAATGCCGGAGGGTGACATTGAGATTGCCTTTTCCGGCCTGCGGC CCGGTGAGAAGCTCTATGAAGAGTTATTGATTGGTGAGTGCAGCATCCGCACTGAGCATGAAATGATTATGCAGGCCCAT GAGGAAAAGCTGAGCTGGGACGAGGTGCATTTTGCCCTGGAGGCGTTCCGTAAGGCGTTAAGCCGTGCCGACCAGGATGC TCTGCGGGCTTTACTGCGTAGTTATGTCAATGGGTATCAGCCAGAGGGGGTGGGTGCTGAGTCACCCGAGAGCCTTGCGG TACGTGAATTGCCGGCCTTTACCGGTAAAGCCGTTAGCGTTACGGAGTAG
Upstream 100 bases:
>100_bases TGGCCGGCCCTTTGGTCGCATGGACTGACCTATTATGAAAAACAAGTACTTCTACTCCCCTGTGCACCGGATGGTGTCAC TGCCTCGTACTGCCAAAAGA
Downstream 100 bases:
>100_bases TCTTTTTTTGGGGGGGTATGTCGGGCGAATCCGGCTTACCTTGTCTTCCTTGCTTCTATGCGCTTATCGTTTAGGCCTGT TGTCTAGGCCAGATTAGACG
Product: polysaccharide biosynthesis protein
Products: UDPglucoseal [C]
Alternate protein names: NA
Number of amino acids: Translated: 629; Mature: 629
Protein sequence:
>629_residues MVMLGADAVAAPLLLWLAYGLRLNTAAPEVADLWLLMATPLVVLPVLYAFGFYRSVVRYLGAEVAWSILFGATLSVVLLA ATTYMVSGSTPRSVFIIFWALLVLYLGGSRFMMRRFLYNVLGKHTLREAVAVFGAGGAGAQLVSGLLSSTELRPLMIVDD APGKQGMLLCGVPVVGRRALEKAVERGAIRTVLLALPSESRATRMAVVRWLETLNVHVQTVPSFADIASGKARLEEVKDV SIEDLLGRDPVPPRADLLSRCISGKHVLVTGAAGSIGSELCRQILKLNPSRLVLLDQSEFGLYAIEKELRATADSLGKSV EIEAVLGSVVNRGLMERLCSDQRVDTVYHAAAYKHVPIVEANPTAGVRNNILGTLEAALGAEAAHVKHFILVSTDKAVRP TNVMGATKRFAELVLQAIAARGSDTVFSMVRFGNVLGSSGSVVPLFRDQIRKGGPVTVTHPDVIRYFMTIPEASQLVIQA GAMAQGGEVFVLDMGEPVRIVDLARTMVHLMGMTVRDEKMPEGDIEIAFSGLRPGEKLYEELLIGECSIRTEHEMIMQAH EEKLSWDEVHFALEAFRKALSRADQDALRALLRSYVNGYQPEGVGAESPESLAVRELPAFTGKAVSVTE
Sequences:
>Translated_629_residues MVMLGADAVAAPLLLWLAYGLRLNTAAPEVADLWLLMATPLVVLPVLYAFGFYRSVVRYLGAEVAWSILFGATLSVVLLA ATTYMVSGSTPRSVFIIFWALLVLYLGGSRFMMRRFLYNVLGKHTLREAVAVFGAGGAGAQLVSGLLSSTELRPLMIVDD APGKQGMLLCGVPVVGRRALEKAVERGAIRTVLLALPSESRATRMAVVRWLETLNVHVQTVPSFADIASGKARLEEVKDV SIEDLLGRDPVPPRADLLSRCISGKHVLVTGAAGSIGSELCRQILKLNPSRLVLLDQSEFGLYAIEKELRATADSLGKSV EIEAVLGSVVNRGLMERLCSDQRVDTVYHAAAYKHVPIVEANPTAGVRNNILGTLEAALGAEAAHVKHFILVSTDKAVRP TNVMGATKRFAELVLQAIAARGSDTVFSMVRFGNVLGSSGSVVPLFRDQIRKGGPVTVTHPDVIRYFMTIPEASQLVIQA GAMAQGGEVFVLDMGEPVRIVDLARTMVHLMGMTVRDEKMPEGDIEIAFSGLRPGEKLYEELLIGECSIRTEHEMIMQAH EEKLSWDEVHFALEAFRKALSRADQDALRALLRSYVNGYQPEGVGAESPESLAVRELPAFTGKAVSVTE >Mature_629_residues MVMLGADAVAAPLLLWLAYGLRLNTAAPEVADLWLLMATPLVVLPVLYAFGFYRSVVRYLGAEVAWSILFGATLSVVLLA ATTYMVSGSTPRSVFIIFWALLVLYLGGSRFMMRRFLYNVLGKHTLREAVAVFGAGGAGAQLVSGLLSSTELRPLMIVDD APGKQGMLLCGVPVVGRRALEKAVERGAIRTVLLALPSESRATRMAVVRWLETLNVHVQTVPSFADIASGKARLEEVKDV SIEDLLGRDPVPPRADLLSRCISGKHVLVTGAAGSIGSELCRQILKLNPSRLVLLDQSEFGLYAIEKELRATADSLGKSV EIEAVLGSVVNRGLMERLCSDQRVDTVYHAAAYKHVPIVEANPTAGVRNNILGTLEAALGAEAAHVKHFILVSTDKAVRP TNVMGATKRFAELVLQAIAARGSDTVFSMVRFGNVLGSSGSVVPLFRDQIRKGGPVTVTHPDVIRYFMTIPEASQLVIQA GAMAQGGEVFVLDMGEPVRIVDLARTMVHLMGMTVRDEKMPEGDIEIAFSGLRPGEKLYEELLIGECSIRTEHEMIMQAH EEKLSWDEVHFALEAFRKALSRADQDALRALLRSYVNGYQPEGVGAESPESLAVRELPAFTGKAVSVTE
Specific function: Required for the biosynthesis of type 1 capsular polysaccharide [H]
COG id: COG1086
COG function: function code MG; Predicted nucleoside-diphosphate sugar epimerases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the polysaccharide synthase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR003869 [H]
Pfam domain/function: PF02719 Polysacc_synt_2 [H]
EC number: 5.1.3.2 [C]
Molecular weight: Translated: 68083; Mature: 68083
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVMLGADAVAAPLLLWLAYGLRLNTAAPEVADLWLLMATPLVVLPVLYAFGFYRSVVRYL CEEECCHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GAEVAWSILFGATLSVVLLAATTYMVSGSTPRSVFIIFWALLVLYLGGSRFMMRRFLYNV HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LGKHTLREAVAVFGAGGAGAQLVSGLLSSTELRPLMIVDDAPGKQGMLLCGVPVVGRRAL HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCHHHHHHH EKAVERGAIRTVLLALPSESRATRMAVVRWLETLNVHVQTVPSFADIASGKARLEEVKDV HHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHEEECCCHHHHHCCHHHHHHHHCC SIEDLLGRDPVPPRADLLSRCISGKHVLVTGAAGSIGSELCRQILKLNPSRLVLLDQSEF CHHHHHCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCC GLYAIEKELRATADSLGKSVEIEAVLGSVVNRGLMERLCSDQRVDTVYHAAAYKHVPIVE CHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEE ANPTAGVRNNILGTLEAALGAEAAHVKHFILVSTDKAVRPTNVMGATKRFAELVLQAIAA CCCCCCHHHHHHHHHHHHHCCCHHHHEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHC RGSDTVFSMVRFGNVLGSSGSVVPLFRDQIRKGGPVTVTHPDVIRYFMTIPEASQLVIQA CCCHHHHHHHHHHHHHCCCCCEEHHHHHHHCCCCCEEEECHHHHHHHHHCCCHHHHHHHH GAMAQGGEVFVLDMGEPVRIVDLARTMVHLMGMTVRDEKMPEGDIEIAFSGLRPGEKLYE CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHH ELLIGECSIRTEHEMIMQAHEEKLSWDEVHFALEAFRKALSRADQDALRALLRSYVNGYQ HHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC PEGVGAESPESLAVRELPAFTGKAVSVTE CCCCCCCCCHHHHHHHCCCCCCCCEEECC >Mature Secondary Structure MVMLGADAVAAPLLLWLAYGLRLNTAAPEVADLWLLMATPLVVLPVLYAFGFYRSVVRYL CEEECCHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GAEVAWSILFGATLSVVLLAATTYMVSGSTPRSVFIIFWALLVLYLGGSRFMMRRFLYNV HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LGKHTLREAVAVFGAGGAGAQLVSGLLSSTELRPLMIVDDAPGKQGMLLCGVPVVGRRAL HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEECCCHHHHHHH EKAVERGAIRTVLLALPSESRATRMAVVRWLETLNVHVQTVPSFADIASGKARLEEVKDV HHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHEEECCCHHHHHCCHHHHHHHHCC SIEDLLGRDPVPPRADLLSRCISGKHVLVTGAAGSIGSELCRQILKLNPSRLVLLDQSEF CHHHHHCCCCCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCC GLYAIEKELRATADSLGKSVEIEAVLGSVVNRGLMERLCSDQRVDTVYHAAAYKHVPIVE CHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEE ANPTAGVRNNILGTLEAALGAEAAHVKHFILVSTDKAVRPTNVMGATKRFAELVLQAIAA CCCCCCHHHHHHHHHHHHHCCCHHHHEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHC RGSDTVFSMVRFGNVLGSSGSVVPLFRDQIRKGGPVTVTHPDVIRYFMTIPEASQLVIQA CCCHHHHHHHHHHHHHCCCCCEEHHHHHHHCCCCCEEEECHHHHHHHHHCCCHHHHHHHH GAMAQGGEVFVLDMGEPVRIVDLARTMVHLMGMTVRDEKMPEGDIEIAFSGLRPGEKLYE CCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHH ELLIGECSIRTEHEMIMQAHEEKLSWDEVHFALEAFRKALSRADQDALRALLRSYVNGYQ HHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC PEGVGAESPESLAVRELPAFTGKAVSVTE CCCCCCCCCHHHHHHHCCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NAD+ [C]
Metal ions: NA
Kcat value (1/min): 57600 [C]
Specific activity: 233.3
Km value (mM): 0.256 {UDPgalactose}} 0.225 {UDPgalactose}} 0.2 {UDPgalactose}} 0.18 {UDPgalactose}} 0.16 {UDPgalactose}} 0.14 {UDPgalactose}} 0.048 {UDPgalactose}} 0.026 {UDPgalactose}} [C]
Substrates: UDPglucose [C]
Specific reaction: UDPglucose <==> UDPglucoseal [C]
General reaction: Epimerization (specificity for carbon forming a hexosulose) [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7961465 [H]