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The map label for this gene is spsC [H]

Identifier: 110833788

GI number: 110833788

Start: 1035767

End: 1036948

Strand: Direct

Name: spsC [H]

Synonym: ABO_0927

Alternate gene names: 110833788

Gene position: 1035767-1036948 (Clockwise)

Preceding gene: 110833787

Following gene: 110833789

Centisome position: 33.2

GC content: 54.74

Gene sequence:

>1182_bases
ATGCTTAACGGTCCTTTCTCCCCCTGGCCTTCCTTTACTGAGGAAGAAGCAGAAGCGGTGTCCCGCGTACTCCTTTCCAA
CAAGGTAAACTACTGGACGGGTCAGGAGGGACGTGAATTTGAACGTGAATTTGCGTCGTTTGCCGGTACGGAATTTGCTA
TCGCTGTCGGGAACGGCACCCTCGCGCTGGATCTGGCGCTAAGAGGGTTCGGGATTGGTCCTGGTGATGAGGTAATCGTT
ACGCCTCGCACTTTTTTGGCCTCGGCCACCGCAGTGATTAATGCTGGGGCTATACCCGTATTCGCCGATGTGGACCCGGA
TACCCAGAACATTACCCCAGATACTGTGGCGGCAGTGATCACGCAAAAGACTAAGGCGGTGGTGTGTGTGCATCTTGCCG
GCTGGCCCTGTGATATGGATGGCATGATGGCGCTGGCTGAGAAGCGGGGTCTGTTTATTATTGAAGATTGTGCCCAGGCC
CATGGTGCCACCTACAAAGGAAGGCCGGTGGGTGGCTTAGGTCATGTGGGGTGCTGGTCGTTCTGCCAGGACAAAATTAT
GTCTACTGGCGGAGAAGGGGGCATGGTCACTTGCAACGACCGTGAGCTGTGGTCCCGTATGTGGAGCTTCAAGGATCATG
GCAAAAGCTGGGAGGCGGTGTACGAGCGTGAGCATCCGCCTGGGTTTCGCTGGTTGCATGAATCTGTAGGCACTAATTGG
CGGCTGACAGAAATGCAGTCCGCCATCGGTCGTATTCAGCTGCAGCGTATGCCTGAATGGATCGCCGCGCGCCAGGCTAA
CTGCCTAAGAATATGGGAAACGGCGGCTTCGTTGCCGGGGCTGCGGGTGCCTGTGGTGCCTGAAGACATTGGTCATGCCG
GTTACAAGTGTTATGTGTTTGTGGATGAAGCCGCGTTTAATGAGCCCGTTGCAGGCGTGCGTGACCAGATTATGAATGCC
GTTGTTGCAAAAGGAGTGCCGTGCTTTTCGGGTTCCTGTTCCGAGGTGTATTTGGAGAAGGCGTTTACCAGCCTTGGTTT
GGGGCCTGAAGAGCGTTTGCCGGTAGCTAAGGCTTTGGGTGAGAGTTCCTTGATGTTTCTGGTGCACCCGACATTAACCG
AGGCCGAGATTGATAAGACTTGTGAAGTGTTGCGCAAGGTGATGAGTGACGTGACTTCATAA

Upstream 100 bases:

>100_bases
TGATGGTAGGCGCCGGCGCCACAGTGGTATCTGATATTCAAGATGGTTTGACGGTGGTGGGTACCCCTGCTCGCCCGCAA
AAAATTCTCTGAGGATTTCC

Downstream 100 bases:

>100_bases
GTGTCGGGTTACGGCCTTGGGCCTCTCTGTGCCCTGGGGTAAACACGACATACGAATGGATGTGTGTGTTTGTGATTTGT
AGGTCGAATTAGCCTGTAAG

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: TDP-D-fucosamine; 2-oxoglutarate [C]

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MLNGPFSPWPSFTEEEAEAVSRVLLSNKVNYWTGQEGREFEREFASFAGTEFAIAVGNGTLALDLALRGFGIGPGDEVIV
TPRTFLASATAVINAGAIPVFADVDPDTQNITPDTVAAVITQKTKAVVCVHLAGWPCDMDGMMALAEKRGLFIIEDCAQA
HGATYKGRPVGGLGHVGCWSFCQDKIMSTGGEGGMVTCNDRELWSRMWSFKDHGKSWEAVYEREHPPGFRWLHESVGTNW
RLTEMQSAIGRIQLQRMPEWIAARQANCLRIWETAASLPGLRVPVVPEDIGHAGYKCYVFVDEAAFNEPVAGVRDQIMNA
VVAKGVPCFSGSCSEVYLEKAFTSLGLGPEERLPVAKALGESSLMFLVHPTLTEAEIDKTCEVLRKVMSDVTS

Sequences:

>Translated_393_residues
MLNGPFSPWPSFTEEEAEAVSRVLLSNKVNYWTGQEGREFEREFASFAGTEFAIAVGNGTLALDLALRGFGIGPGDEVIV
TPRTFLASATAVINAGAIPVFADVDPDTQNITPDTVAAVITQKTKAVVCVHLAGWPCDMDGMMALAEKRGLFIIEDCAQA
HGATYKGRPVGGLGHVGCWSFCQDKIMSTGGEGGMVTCNDRELWSRMWSFKDHGKSWEAVYEREHPPGFRWLHESVGTNW
RLTEMQSAIGRIQLQRMPEWIAARQANCLRIWETAASLPGLRVPVVPEDIGHAGYKCYVFVDEAAFNEPVAGVRDQIMNA
VVAKGVPCFSGSCSEVYLEKAFTSLGLGPEERLPVAKALGESSLMFLVHPTLTEAEIDKTCEVLRKVMSDVTS
>Mature_393_residues
MLNGPFSPWPSFTEEEAEAVSRVLLSNKVNYWTGQEGREFEREFASFAGTEFAIAVGNGTLALDLALRGFGIGPGDEVIV
TPRTFLASATAVINAGAIPVFADVDPDTQNITPDTVAAVITQKTKAVVCVHLAGWPCDMDGMMALAEKRGLFIIEDCAQA
HGATYKGRPVGGLGHVGCWSFCQDKIMSTGGEGGMVTCNDRELWSRMWSFKDHGKSWEAVYEREHPPGFRWLHESVGTNW
RLTEMQSAIGRIQLQRMPEWIAARQANCLRIWETAASLPGLRVPVVPEDIGHAGYKCYVFVDEAAFNEPVAGVRDQIMNA
VVAKGVPCFSGSCSEVYLEKAFTSLGLGPEERLPVAKALGESSLMFLVHPTLTEAEIDKTCEVLRKVMSDVTS

Specific function: Involved In Eca Elongation. [C]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI2367285, Length=209, Percent_Identity=39.2344497607655, Blast_Score=154, Evalue=8e-39,
Organism=Escherichia coli, GI145693159, Length=391, Percent_Identity=30.690537084399, Blast_Score=149, Evalue=3e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 42840; Mature: 42840

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNGPFSPWPSFTEEEAEAVSRVLLSNKVNYWTGQEGREFEREFASFAGTEFAIAVGNGT
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCE
LALDLALRGFGIGPGDEVIVTPRTFLASATAVINAGAIPVFADVDPDTQNITPDTVAAVI
EEEEEEEHHCCCCCCCCEEECCHHHHHHHHHHEECCCCEEEECCCCCCCCCCHHHHHHHH
TQKTKAVVCVHLAGWPCDMDGMMALAEKRGLFIIEDCAQAHGATYKGRPVGGLGHVGCWS
HHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEHHHHHCCCCCCCCCCCCCCCHHHHH
FCQDKIMSTGGEGGMVTCNDRELWSRMWSFKDHGKSWEAVYEREHPPGFRWLHESVGTNW
HHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHCCCE
RLTEMQSAIGRIQLQRMPEWIAARQANCLRIWETAASLPGLRVPVVPEDIGHAGYKCYVF
EHHHHHHHHHHHHHHHCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEE
VDEAAFNEPVAGVRDQIMNAVVAKGVPCFSGSCSEVYLEKAFTSLGLGPEERLPVAKALG
EECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCHHHHCC
ESSLMFLVHPTLTEAEIDKTCEVLRKVMSDVTS
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLNGPFSPWPSFTEEEAEAVSRVLLSNKVNYWTGQEGREFEREFASFAGTEFAIAVGNGT
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCE
LALDLALRGFGIGPGDEVIVTPRTFLASATAVINAGAIPVFADVDPDTQNITPDTVAAVI
EEEEEEEHHCCCCCCCCEEECCHHHHHHHHHHEECCCCEEEECCCCCCCCCCHHHHHHHH
TQKTKAVVCVHLAGWPCDMDGMMALAEKRGLFIIEDCAQAHGATYKGRPVGGLGHVGCWS
HHCCCEEEEEEECCCCCCHHHHHHHHHHCCCEEEEHHHHHCCCCCCCCCCCCCCCHHHHH
FCQDKIMSTGGEGGMVTCNDRELWSRMWSFKDHGKSWEAVYEREHPPGFRWLHESVGTNW
HHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHCCCE
RLTEMQSAIGRIQLQRMPEWIAARQANCLRIWETAASLPGLRVPVVPEDIGHAGYKCYVF
EHHHHHHHHHHHHHHHCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEE
VDEAAFNEPVAGVRDQIMNAVVAKGVPCFSGSCSEVYLEKAFTSLGLGPEERLPVAKALG
EECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCHHHHCC
ESSLMFLVHPTLTEAEIDKTCEVLRKVMSDVTS
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: dTDP-4-dehydro-6-deoxy-D-glucose; L-glutamate [C]

Specific reaction: dTDP-4-dehydro-6-deoxy-D-glucose + L-glutamate = TDP-D-fucosamine + 2-oxoglutarate [C]

General reaction: Carbon-Oxygen Lyases; Hydro-Lyases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]