| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is wza [H]
Identifier: 110833766
GI number: 110833766
Start: 1011508
End: 1012638
Strand: Direct
Name: wza [H]
Synonym: ABO_0905
Alternate gene names: 110833766
Gene position: 1011508-1012638 (Clockwise)
Preceding gene: 110833765
Following gene: 110833767
Centisome position: 32.42
GC content: 49.43
Gene sequence:
>1131_bases ATGAATCCACTCGGTAAATTTTTGGCTGCTGGCCTGTTTGTATTATTGGCGGGCTGTACGGTTGTGCCGGGTTCCTATCA TTCTCCAACTCCGGGTTGGTTTCTGGATGATGAGGATGGTTCATCAGAAGGCGCGCCGCTTCCTGATGTAGTAAAAGTTC ATTCAATTGGAACGGGGATACTCAAAAAACAAGATATACATCCGGTTGACAGAGGCGTTCCTCCTGCTATCGATTTGTCC GATGAGGATTACCATTATTTGGTTGGCCCGGGCGACGTGCTGCAGATTACGGTTTGGGATCATCCCGAGCTGACTATTCC TGCCGGTTCTTTGCGCAGTTCGGCTGAGTCGGGGAATTGGGTTCACAGTGATGGCACTATTTTTTACCCGTACGTAGGGA TCGTGAGTGTTGAAGGGCTGCGGGTAACGGAAATACGAGACATGCTTACCCGACGTCTTTCTAAATACATCGAAGACCCA CAAGTCGATGTGTCTATCGCGGCCTTTCGTCACAAAAAAATCTATGTTACCGGTGAAGTCGATGAGCCCGGTTTGTTTCC GGTGACGAATGTGCCTACTCGATTAATTGACGCGATTGGCGAAGCGGGCGGGCTCACAGAAGCAGCGGACTGGAGTAGCG TCGTTCTTACCCGTAATGGCAGGGATTATCGCCTTTCGTTGCGTGATATCTATCAGTATGGCAATACCAGCCAGAATATC CTGCTGCAGCCTAATGATGTTATTAACGTAAACCCGGTGACGGATGCGAAAGTGTTTGTTCTTGGTGAGGTAGGTAAAGC TGCCAGCCTGAAGATGGGGCGCAATGGTATAACGCTGGCGGAAGCGTTAGCTGAAAATGGTGGCTTTGACCAGCGTCAAT CCGATGCTTCAGGGGTGTTTGTCTTCCGCAAGGCTCCTTTGGCAGCAGATCATGGTATTGATGTTTATCAGCTAAATGCA AAAGATGCCGCAGCTCTGGTACTGGCAGACAGCTTTACGTTACAAGAGCGGGATATTGTTTATGTTACTGCGGCGCCTCT GGCCAAGTGGAACCGCGTGCTTAGTCTGATTTTGCCTTCGGTTAGTGCGTTGTACTTGGGGAGCAGTACAGAAGATAAAT TGAGGGATTAA
Upstream 100 bases:
>100_bases CGAATGAAGCCGTAGTCACCTATGAAAAGCGGGAGCGGTTTACCGCTGGCCTTCAGTGGACCCGCGACATCAATTGGTAA CAGAGTTTATGCAGGTATTT
Downstream 100 bases:
>100_bases GCATGTTCAACCGGATTCTGGTTGTCTGTGATGGAAATATTTGTAGAAGTCCCACTTTGGCTGCACAACTCAAAGCACTA AGGCCCGAGAAAATCGTTGA
Product: outer membrane polysaccharide export protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 376; Mature: 376
Protein sequence:
>376_residues MNPLGKFLAAGLFVLLAGCTVVPGSYHSPTPGWFLDDEDGSSEGAPLPDVVKVHSIGTGILKKQDIHPVDRGVPPAIDLS DEDYHYLVGPGDVLQITVWDHPELTIPAGSLRSSAESGNWVHSDGTIFYPYVGIVSVEGLRVTEIRDMLTRRLSKYIEDP QVDVSIAAFRHKKIYVTGEVDEPGLFPVTNVPTRLIDAIGEAGGLTEAADWSSVVLTRNGRDYRLSLRDIYQYGNTSQNI LLQPNDVINVNPVTDAKVFVLGEVGKAASLKMGRNGITLAEALAENGGFDQRQSDASGVFVFRKAPLAADHGIDVYQLNA KDAAALVLADSFTLQERDIVYVTAAPLAKWNRVLSLILPSVSALYLGSSTEDKLRD
Sequences:
>Translated_376_residues MNPLGKFLAAGLFVLLAGCTVVPGSYHSPTPGWFLDDEDGSSEGAPLPDVVKVHSIGTGILKKQDIHPVDRGVPPAIDLS DEDYHYLVGPGDVLQITVWDHPELTIPAGSLRSSAESGNWVHSDGTIFYPYVGIVSVEGLRVTEIRDMLTRRLSKYIEDP QVDVSIAAFRHKKIYVTGEVDEPGLFPVTNVPTRLIDAIGEAGGLTEAADWSSVVLTRNGRDYRLSLRDIYQYGNTSQNI LLQPNDVINVNPVTDAKVFVLGEVGKAASLKMGRNGITLAEALAENGGFDQRQSDASGVFVFRKAPLAADHGIDVYQLNA KDAAALVLADSFTLQERDIVYVTAAPLAKWNRVLSLILPSVSALYLGSSTEDKLRD >Mature_376_residues MNPLGKFLAAGLFVLLAGCTVVPGSYHSPTPGWFLDDEDGSSEGAPLPDVVKVHSIGTGILKKQDIHPVDRGVPPAIDLS DEDYHYLVGPGDVLQITVWDHPELTIPAGSLRSSAESGNWVHSDGTIFYPYVGIVSVEGLRVTEIRDMLTRRLSKYIEDP QVDVSIAAFRHKKIYVTGEVDEPGLFPVTNVPTRLIDAIGEAGGLTEAADWSSVVLTRNGRDYRLSLRDIYQYGNTSQNI LLQPNDVINVNPVTDAKVFVLGEVGKAASLKMGRNGITLAEALAENGGFDQRQSDASGVFVFRKAPLAADHGIDVYQLNA KDAAALVLADSFTLQERDIVYVTAAPLAKWNRVLSLILPSVSALYLGSSTEDKLRD
Specific function: Involved in the biosynthesis of amylovoran which functions as a virulence factor. Might be involved in the translocation of polysaccharides across the outer membrane [H]
COG id: COG1596
COG function: function code M; Periplasmic protein involved in polysaccharide export
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the BexD/CtrA/VexA family [H]
Homologues:
Organism=Escherichia coli, GI1787218, Length=362, Percent_Identity=46.4088397790055, Blast_Score=331, Evalue=6e-92, Organism=Escherichia coli, GI1788376, Length=366, Percent_Identity=46.448087431694, Blast_Score=322, Evalue=4e-89,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003715 - InterPro: IPR019554 [H]
Pfam domain/function: PF02563 Poly_export; PF10531 SLBB [H]
EC number: NA
Molecular weight: Translated: 40652; Mature: 40652
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPLGKFLAAGLFVLLAGCTVVPGSYHSPTPGWFLDDEDGSSEGAPLPDVVKVHSIGTGI CCHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCEEECCCCCCCCCCCCHHEEEECCCCCC LKKQDIHPVDRGVPPAIDLSDEDYHYLVGPGDVLQITVWDHPELTIPAGSLRSSAESGNW CCCCCCCHHHCCCCCEECCCCCCCEEEECCCCEEEEEEECCCCEEECCCHHHCCCCCCCE VHSDGTIFYPYVGIVSVEGLRVTEIRDMLTRRLSKYIEDPQVDVSIAAFRHKKIYVTGEV EECCCCEEEEEEEEEEECCEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEEECCC DEPGLFPVTNVPTRLIDAIGEAGGLTEAADWSSVVLTRNGRDYRLSLRDIYQYGNTSQNI CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEHHHHHHCCCCCCEE LLQPNDVINVNPVTDAKVFVLGEVGKAASLKMGRNGITLAEALAENGGFDQRQSDASGVF EECCCCEEEECCCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCEE VFRKAPLAADHGIDVYQLNAKDAAALVLADSFTLQERDIVYVTAAPLAKWNRVLSLILPS EEECCCCCCCCCCEEEEECCCCCEEEEEECCCEECCCCEEEEECCCHHHHHHHHHHHHCC VSALYLGSSTEDKLRD CEEEEECCCCHHHHCC >Mature Secondary Structure MNPLGKFLAAGLFVLLAGCTVVPGSYHSPTPGWFLDDEDGSSEGAPLPDVVKVHSIGTGI CCHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCEEECCCCCCCCCCCCHHEEEECCCCCC LKKQDIHPVDRGVPPAIDLSDEDYHYLVGPGDVLQITVWDHPELTIPAGSLRSSAESGNW CCCCCCCHHHCCCCCEECCCCCCCEEEECCCCEEEEEEECCCCEEECCCHHHCCCCCCCE VHSDGTIFYPYVGIVSVEGLRVTEIRDMLTRRLSKYIEDPQVDVSIAAFRHKKIYVTGEV EECCCCEEEEEEEEEEECCEEHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEEECCC DEPGLFPVTNVPTRLIDAIGEAGGLTEAADWSSVVLTRNGRDYRLSLRDIYQYGNTSQNI CCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEHHHHHHCCCCCCEE LLQPNDVINVNPVTDAKVFVLGEVGKAASLKMGRNGITLAEALAENGGFDQRQSDASGVF EECCCCEEEECCCCCCEEEEEECCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCEE VFRKAPLAADHGIDVYQLNAKDAAALVLADSFTLQERDIVYVTAAPLAKWNRVLSLILPS EEECCCCCCCCCCEEEEECCCCCEEEEEECCCEECCCCEEEEECCCHHHHHHHHHHHHCC VSALYLGSSTEDKLRD CEEEEECCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7596293 [H]