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The map label for this gene is yafM [H]

Identifier: 110833760

GI number: 110833760

Start: 1002977

End: 1003324

Strand: Direct

Name: yafM [H]

Synonym: ABO_0899

Alternate gene names: 110833760

Gene position: 1002977-1003324 (Clockwise)

Preceding gene: 110833759

Following gene: 110833761

Centisome position: 32.15

GC content: 54.6

Gene sequence:

>348_bases
ATGAATGCCATTGTTATTCTGCCGGGCGATCTCCACTGCATCTGGACCCTGCCGGAAACGGACCATGACTTCTCAACCCG
CTGGCGCTTCATCAAGGGGGTGGTTACAAAACATGGCCAAATGAGCACACCGATCTGGCAAAAGCGTTTCTGGGAACATA
CCCTTCGTGACGAGTATGATTTGCAAACTCACACCGATTACCTCTACTACAACCCGGTAACGCATGGTTATGTCCTCCAG
CCTGCCGATTGGCCTTACAGCAGCTTTCACCGGGACGTGGCCCGTGGCCGATACCCTGCGAACTGGGGGGGGGAATGGTC
ACTGCCGGAAGACGTTGGCAACGAATAA

Upstream 100 bases:

>100_bases
GGTGGGGATGTGACTTACGCTGGGTTGCGCCACCCCCTCTCGTGTCGTTCTTTCATTACGTCATGCCTTCAAAAGGGTAA
AAACGCGCCACCCTTTCCGC

Downstream 100 bases:

>100_bases
TGCGCAATGTCGGATTACGCCTGTCAGGCTAATTCGACCTACTTTCCCGCTCGCAGGTCGTGTTAGGCGTAGCCGTAACC
CGATACAGGCTTTTGCAACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MNAIVILPGDLHCIWTLPETDHDFSTRWRFIKGVVTKHGQMSTPIWQKRFWEHTLRDEYDLQTHTDYLYYNPVTHGYVLQ
PADWPYSSFHRDVARGRYPANWGGEWSLPEDVGNE

Sequences:

>Translated_115_residues
MNAIVILPGDLHCIWTLPETDHDFSTRWRFIKGVVTKHGQMSTPIWQKRFWEHTLRDEYDLQTHTDYLYYNPVTHGYVLQ
PADWPYSSFHRDVARGRYPANWGGEWSLPEDVGNE
>Mature_115_residues
MNAIVILPGDLHCIWTLPETDHDFSTRWRFIKGVVTKHGQMSTPIWQKRFWEHTLRDEYDLQTHTDYLYYNPVTHGYVLQ
PADWPYSSFHRDVARGRYPANWGGEWSLPEDVGNE

Specific function: Unknown

COG id: COG1943

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0217 [H]

Homologues:

Organism=Escherichia coli, GI1786422, Length=105, Percent_Identity=58.0952380952381, Blast_Score=130, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13663; Mature: 13663

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAIVILPGDLHCIWTLPETDHDFSTRWRFIKGVVTKHGQMSTPIWQKRFWEHTLRDEYD
CCEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC
LQTHTDYLYYNPVTHGYVLQPADWPYSSFHRDVARGRYPANWGGEWSLPEDVGNE
CCCCCCEEEECCCCCCEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNAIVILPGDLHCIWTLPETDHDFSTRWRFIKGVVTKHGQMSTPIWQKRFWEHTLRDEYD
CCEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCC
LQTHTDYLYYNPVTHGYVLQPADWPYSSFHRDVARGRYPANWGGEWSLPEDVGNE
CCCCCCEEEECCCCCCEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7596361; 9278503 [H]