| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110833754
Identifier: 110833754
GI number: 110833754
Start: 991797
End: 993131
Strand: Direct
Name: 110833754
Synonym: ABO_0893
Alternate gene names: NA
Gene position: 991797-993131 (Clockwise)
Preceding gene: 110833753
Following gene: 110833755
Centisome position: 31.79
GC content: 55.96
Gene sequence:
>1335_bases ATGTTGGAGCACCTCAGCAACGGTAGGCTGGCGGGGCTGTTTATGCCGCAGCCGAGAGTGCTCTGGTCGATGTGCGAAGC GATCATTCTGACCGCCCTGGCGGTTGGTTTGGGCCTCTGGTTACGTTATGACGATCCGTTGACGCTTATCGGAACTTTCC GTTGGGTGCTGCTAGTGCCTATCCTGTTGGCGCTTCGTTACGGCAGCCTGCTCGGTGTGTTTGGCATGCTGTGCTTGGTC AGTAGCTGGTTTATTCTCAGGTTTTTCGGCTTTTACCCCAGTTTGCCCTTTCCTGAATCCACCATGCTCGGTGGCTTCGT TATTATTCTGATCTGCGGCGAGTTTGCCGATATGTGGCGGGTCAAACTGATGCGCGCCGACAGTGCTTCCAGTTATGCGT TGGAGCGCCTGCAGAATCTTACGCAGCGCTATGTGTTGTTGCGTTTGTCCCATGACCGCCTGGAAGAGAATCTACTCGTT AAACCCTACACCGTGCGCGATGCGCTGGCGCGGTTGCGCGAGCTGACCTTAGATGAAAGTGACAGCATTCGGCTGCCTGC AGCGGATGATCTGGTGCATCTTCTGGCAGAGTATTGCCAGCTACAGCGTTGTGCCTTGTACCGCGTTGTTAATGGCCGGA TTGATGACGAGCCGGCGGCCCTGTTGGGAGAAAATGGCCCCCTGGACCGAGATAACGAACTCCTTCAGCACGCGCTAGAT CATCGGCTATTGGCCCACGTTCAGCAGCAAGGCCACGACAGCAATTACCATGGCCAATATTTGGTGGCTGCGCCTATCAT CAACAGCGGTGGAGACCTCATCGGGATGATGGTGATTGAGCGCCTGCCATTCCTCTCGATCAACTATGAAAATCTGCAGT TGCTGTCTGTGCTGCTGAACTTTTATGCGGATATCGTGCACGCCGGCGATGAAGTGGATGAGATGTTGGATCGCTGGCCG ACCATGCCCTTCCGTATTGCCAGCGAGCTGGCTGCCTTGGTGCGTTTGCGTGAAGGTGGCCGAGTAGATACTTCCCTGAC CCTATTTGTGGCCGATGAAAGCGAGCAGGCCGGGCTAATTCTGGATGCTCTGGCGCGTGGCCTGCGTAGCCTCGACTTGG CATGGTGGATCAGCGATAGGGTACTGATGATCATGATGCCTATGACCGGGGAATCCAGTCTGGAGGGCTATGTTCTGCGT ACGGAAAAATGGCTGCAAGAGGAGTACGTCTTCATGAGCCTACGCCAGGCGGGCATACAGTTCTTTTACCGGCACCTGGA CCAGCGAGACCCCGAGGTGCAGATCGCCAGGTTGCTGGAGGCAGCCGGTGTCTAG
Upstream 100 bases:
>100_bases TTTATAGCGGCACCGGCTCGCGCGCGGGCTGGGCCCGCCAGTCGCTCAGTGAAGTCGGCCAGAAAGTGATCGATAAACTG ATCTCGCCGGTGGTGCAGTA
Downstream 100 bases:
>100_bases CCTCAAGCTAATTATTTATGCCGTCGCTGCAGAAATCGCATCGCTAATGCTGTTGTTGAGCAAGCAGGCGGATTTATCGA TTTTCTTGTTGTATCTGTTA
Product: hypothetical protein
Products: NA
Alternate protein names: Polysaccharide Transporter Component Transmembrane Protein
Number of amino acids: Translated: 444; Mature: 444
Protein sequence:
>444_residues MLEHLSNGRLAGLFMPQPRVLWSMCEAIILTALAVGLGLWLRYDDPLTLIGTFRWVLLVPILLALRYGSLLGVFGMLCLV SSWFILRFFGFYPSLPFPESTMLGGFVIILICGEFADMWRVKLMRADSASSYALERLQNLTQRYVLLRLSHDRLEENLLV KPYTVRDALARLRELTLDESDSIRLPAADDLVHLLAEYCQLQRCALYRVVNGRIDDEPAALLGENGPLDRDNELLQHALD HRLLAHVQQQGHDSNYHGQYLVAAPIINSGGDLIGMMVIERLPFLSINYENLQLLSVLLNFYADIVHAGDEVDEMLDRWP TMPFRIASELAALVRLREGGRVDTSLTLFVADESEQAGLILDALARGLRSLDLAWWISDRVLMIMMPMTGESSLEGYVLR TEKWLQEEYVFMSLRQAGIQFFYRHLDQRDPEVQIARLLEAAGV
Sequences:
>Translated_444_residues MLEHLSNGRLAGLFMPQPRVLWSMCEAIILTALAVGLGLWLRYDDPLTLIGTFRWVLLVPILLALRYGSLLGVFGMLCLV SSWFILRFFGFYPSLPFPESTMLGGFVIILICGEFADMWRVKLMRADSASSYALERLQNLTQRYVLLRLSHDRLEENLLV KPYTVRDALARLRELTLDESDSIRLPAADDLVHLLAEYCQLQRCALYRVVNGRIDDEPAALLGENGPLDRDNELLQHALD HRLLAHVQQQGHDSNYHGQYLVAAPIINSGGDLIGMMVIERLPFLSINYENLQLLSVLLNFYADIVHAGDEVDEMLDRWP TMPFRIASELAALVRLREGGRVDTSLTLFVADESEQAGLILDALARGLRSLDLAWWISDRVLMIMMPMTGESSLEGYVLR TEKWLQEEYVFMSLRQAGIQFFYRHLDQRDPEVQIARLLEAAGV >Mature_444_residues MLEHLSNGRLAGLFMPQPRVLWSMCEAIILTALAVGLGLWLRYDDPLTLIGTFRWVLLVPILLALRYGSLLGVFGMLCLV SSWFILRFFGFYPSLPFPESTMLGGFVIILICGEFADMWRVKLMRADSASSYALERLQNLTQRYVLLRLSHDRLEENLLV KPYTVRDALARLRELTLDESDSIRLPAADDLVHLLAEYCQLQRCALYRVVNGRIDDEPAALLGENGPLDRDNELLQHALD HRLLAHVQQQGHDSNYHGQYLVAAPIINSGGDLIGMMVIERLPFLSINYENLQLLSVLLNFYADIVHAGDEVDEMLDRWP TMPFRIASELAALVRLREGGRVDTSLTLFVADESEQAGLILDALARGLRSLDLAWWISDRVLMIMMPMTGESSLEGYVLR TEKWLQEEYVFMSLRQAGIQFFYRHLDQRDPEVQIARLLEAAGV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50481; Mature: 50481
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLEHLSNGRLAGLFMPQPRVLWSMCEAIILTALAVGLGLWLRYDDPLTLIGTFRWVLLVP CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHH ILLALRYGSLLGVFGMLCLVSSWFILRFFGFYPSLPFPESTMLGGFVIILICGEFADMWR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH VKLMRADSASSYALERLQNLTQRYVLLRLSHDRLEENLLVKPYTVRDALARLRELTLDES HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC DSIRLPAADDLVHLLAEYCQLQRCALYRVVNGRIDDEPAALLGENGPLDRDNELLQHALD CCEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCHHHHHHHHHH HRLLAHVQQQGHDSNYHGQYLVAAPIINSGGDLIGMMVIERLPFLSINYENLQLLSVLLN HHHHHHHHHCCCCCCCCCCEEEEECEECCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHH FYADIVHAGDEVDEMLDRWPTMPFRIASELAALVRLREGGRVDTSLTLFVADESEQAGLI HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHH LDALARGLRSLDLAWWISDRVLMIMMPMTGESSLEGYVLRTEKWLQEEYVFMSLRQAGIQ HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHH FFYRHLDQRDPEVQIARLLEAAGV HHHHHHCCCCCHHHHHHHHHHHCC >Mature Secondary Structure MLEHLSNGRLAGLFMPQPRVLWSMCEAIILTALAVGLGLWLRYDDPLTLIGTFRWVLLVP CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHH ILLALRYGSLLGVFGMLCLVSSWFILRFFGFYPSLPFPESTMLGGFVIILICGEFADMWR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH VKLMRADSASSYALERLQNLTQRYVLLRLSHDRLEENLLVKPYTVRDALARLRELTLDES HHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC DSIRLPAADDLVHLLAEYCQLQRCALYRVVNGRIDDEPAALLGENGPLDRDNELLQHALD CCEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCHHHHHHHHHH HRLLAHVQQQGHDSNYHGQYLVAAPIINSGGDLIGMMVIERLPFLSINYENLQLLSVLLN HHHHHHHHHCCCCCCCCCCEEEEECEECCCCHHHHHHHHHHCCCEEECCCHHHHHHHHHH FYADIVHAGDEVDEMLDRWPTMPFRIASELAALVRLREGGRVDTSLTLFVADESEQAGLI HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHH LDALARGLRSLDLAWWISDRVLMIMMPMTGESSLEGYVLRTEKWLQEEYVFMSLRQAGIQ HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHH FFYRHLDQRDPEVQIARLLEAAGV HHHHHHCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA