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The map label for this gene is yfdZ [H]

Identifier: 110833666

GI number: 110833666

Start: 897057

End: 898286

Strand: Direct

Name: yfdZ [H]

Synonym: ABO_0805

Alternate gene names: 110833666

Gene position: 897057-898286 (Clockwise)

Preceding gene: 110833665

Following gene: 110833667

Centisome position: 28.75

GC content: 53.82

Gene sequence:

>1230_bases
ATGTGTCCGCCTTCTTTTATTCCCACCCAAGGTGTTGTCGTGGAAACTGATTTCCAGCGAATCCGTCGTTTGCCTCCCTA
TGTCTTCAACATTGTTGGAGAGATGAAGGCAGCCGCGCGAGCACGGGGTGAGGATATTATCGATTTCAGCATGGGTAACC
CGGATCAGCCCACACCGAAGCACATTGTCGATAAGCTCACAGAGACCGCCCAACGAGGAGATACCCACCGTTATTCGCAG
TCACGTGGTATTCCTCGCTTACGCAAGGCGATGACAGATTGGTATCAGCGCCGATATGAGGTGGATCTGGATCCGGAATC
CGAAGCTATTGTTACCATCGGCTCCAAAGAGGGGTTGGCGCACTTGGCGCTGGCTACGATGGGCCCAGGCGATACGGTAT
TGGTGCCGAACCCTAGCTACCCGATCCATCCCTACGGCTTTGTGATTTCCAACGCGGATATCCGCCATGTCCCTATGGTT
AAGGGCGTGGATTTCTTTGTCGAGTTGGAGCGGGCGATCAAGGAATCTTGGCCCAAGCCGAAAATGTTGGTGCTCAATTT
TCCTGGCAATCCCACCGCGCAGTGCGTGGAGCTGGAATTCTTCGAGAAAGTGGTCGCTATCGCCCGTGAGCATCAGATTT
GGGTGGTGCACGATATCGCCTATGCAGATATCGTGTTCGATGGCTACAAAGCACCGTCCATTCTTCAGGTAGAGGGAGCC
AAGGATGTGGCGGTGGAGTTCTTTTCCCTATCCAAAAGTTACAACATGCCTGGTTGGCGGGTGGGTTTCTGTTGCGGCAA
CAAAGACTTGATCCATGCCCTAGCCCGGATCAAATCGTACATGGACTACGGTACTTTTACGCCGATCCAGGTGGCGGCTA
TCGCGGCCCTCGAAGGGGACCAGAGTTGTGTTGCGGAAATCTGCGAGATGTACCGTCAACGGCGGGATGTATTGGTAGAA
GGCTTGGGCGACATTGGTTGGCCGGTTGAAAAACCCCGCGCCACCATGTTTGTTTGGGCGGAAATTCCGGAACCCTATCG
GGCCATGGGCTCGCTGGAGTTTTCCAAGAAACTGCTTATCGAAGCCGGTGTAGCAGTGTCGCCAGGCGTGGGTTTTGGTG
ATTATGGCGATGATCATGTGCGCTTTGCACTGATTGAAAACGAACAACGTACCCGGCAGGCCATGCGCGGCATCAAAAAG
ATGTTCCGTCAGGATGGGTTGCTGGACTAA

Upstream 100 bases:

>100_bases
CTCAAGCGACTGAACTGATCAGTCTGAACCCCCCGTATTACGGCGGTTTGCTGCTGTAAACACAGGGCGGATACATTGAC
GGCGCCGAGCTGCGCCGTTA

Downstream 100 bases:

>100_bases
CAGGATGCGCCTCGGCGCCCCTGAATAAAGAGAGGAAATGTCGTGAAATCGGTGAAAGTGGGTATTGCTGGTCTGGGTAC
GGTTGGTTCAGGCACCGTGA

Product: aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MCPPSFIPTQGVVVETDFQRIRRLPPYVFNIVGEMKAAARARGEDIIDFSMGNPDQPTPKHIVDKLTETAQRGDTHRYSQ
SRGIPRLRKAMTDWYQRRYEVDLDPESEAIVTIGSKEGLAHLALATMGPGDTVLVPNPSYPIHPYGFVISNADIRHVPMV
KGVDFFVELERAIKESWPKPKMLVLNFPGNPTAQCVELEFFEKVVAIAREHQIWVVHDIAYADIVFDGYKAPSILQVEGA
KDVAVEFFSLSKSYNMPGWRVGFCCGNKDLIHALARIKSYMDYGTFTPIQVAAIAALEGDQSCVAEICEMYRQRRDVLVE
GLGDIGWPVEKPRATMFVWAEIPEPYRAMGSLEFSKKLLIEAGVAVSPGVGFGDYGDDHVRFALIENEQRTRQAMRGIKK
MFRQDGLLD

Sequences:

>Translated_409_residues
MCPPSFIPTQGVVVETDFQRIRRLPPYVFNIVGEMKAAARARGEDIIDFSMGNPDQPTPKHIVDKLTETAQRGDTHRYSQ
SRGIPRLRKAMTDWYQRRYEVDLDPESEAIVTIGSKEGLAHLALATMGPGDTVLVPNPSYPIHPYGFVISNADIRHVPMV
KGVDFFVELERAIKESWPKPKMLVLNFPGNPTAQCVELEFFEKVVAIAREHQIWVVHDIAYADIVFDGYKAPSILQVEGA
KDVAVEFFSLSKSYNMPGWRVGFCCGNKDLIHALARIKSYMDYGTFTPIQVAAIAALEGDQSCVAEICEMYRQRRDVLVE
GLGDIGWPVEKPRATMFVWAEIPEPYRAMGSLEFSKKLLIEAGVAVSPGVGFGDYGDDHVRFALIENEQRTRQAMRGIKK
MFRQDGLLD
>Mature_409_residues
MCPPSFIPTQGVVVETDFQRIRRLPPYVFNIVGEMKAAARARGEDIIDFSMGNPDQPTPKHIVDKLTETAQRGDTHRYSQ
SRGIPRLRKAMTDWYQRRYEVDLDPESEAIVTIGSKEGLAHLALATMGPGDTVLVPNPSYPIHPYGFVISNADIRHVPMV
KGVDFFVELERAIKESWPKPKMLVLNFPGNPTAQCVELEFFEKVVAIAREHQIWVVHDIAYADIVFDGYKAPSILQVEGA
KDVAVEFFSLSKSYNMPGWRVGFCCGNKDLIHALARIKSYMDYGTFTPIQVAAIAALEGDQSCVAEICEMYRQRRDVLVE
GLGDIGWPVEKPRATMFVWAEIPEPYRAMGSLEFSKKLLIEAGVAVSPGVGFGDYGDDHVRFALIENEQRTRQAMRGIKK
MFRQDGLLD

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI95147551, Length=389, Percent_Identity=22.107969151671, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI169881279, Length=389, Percent_Identity=22.107969151671, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI56713256, Length=343, Percent_Identity=21.5743440233236, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI56713254, Length=313, Percent_Identity=21.7252396166134, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI169881281, Length=239, Percent_Identity=23.8493723849372, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI4885351, Length=395, Percent_Identity=24.8101265822785, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1788722, Length=394, Percent_Identity=74.6192893401015, Blast_Score=615, Evalue=1e-177,
Organism=Escherichia coli, GI1786816, Length=349, Percent_Identity=26.3610315186246, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1788627, Length=389, Percent_Identity=26.7352185089974, Blast_Score=97, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71994476, Length=395, Percent_Identity=25.5696202531646, Blast_Score=113, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI71994472, Length=395, Percent_Identity=25.5696202531646, Blast_Score=113, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17567369, Length=398, Percent_Identity=24.1206030150754, Blast_Score=107, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17567663, Length=375, Percent_Identity=21.8666666666667, Blast_Score=65, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6322401, Length=394, Percent_Identity=21.3197969543147, Blast_Score=87, Evalue=5e-18,
Organism=Saccharomyces cerevisiae, GI6323118, Length=356, Percent_Identity=25.561797752809, Blast_Score=85, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6320317, Length=354, Percent_Identity=23.1638418079096, Blast_Score=78, Evalue=3e-15,
Organism=Drosophila melanogaster, GI28573069, Length=419, Percent_Identity=22.4343675417661, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24646114, Length=419, Percent_Identity=22.4343675417661, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI28573067, Length=419, Percent_Identity=22.4343675417661, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI28573065, Length=419, Percent_Identity=22.4343675417661, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24641770, Length=408, Percent_Identity=21.3235294117647, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24641760, Length=408, Percent_Identity=21.3235294117647, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24641768, Length=408, Percent_Identity=21.3235294117647, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24641766, Length=408, Percent_Identity=21.3235294117647, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24641764, Length=408, Percent_Identity=21.3235294117647, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI45551451, Length=408, Percent_Identity=21.3235294117647, Blast_Score=69, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: 2.6.1.- [C]

Molecular weight: Translated: 45945; Mature: 45945

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: PS00105 AA_TRANSFER_CLASS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCPPSFIPTQGVVVETDFQRIRRLPPYVFNIVGEMKAAARARGEDIIDFSMGNPDQPTPK
CCCCCCCCCCCEEEECCHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHH
HIVDKLTETAQRGDTHRYSQSRGIPRLRKAMTDWYQRRYEVDLDPESEAIVTIGSKEGLA
HHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHEECCCCCCCCEEEEECCCCCCE
HLALATMGPGDTVLVPNPSYPIHPYGFVISNADIRHVPMVKGVDFFVELERAIKESWPKP
EEEEEECCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
KMLVLNFPGNPTAQCVELEFFEKVVAIAREHQIWVVHDIAYADIVFDGYKAPSILQVEGA
CEEEEECCCCCCHHEEHHHHHHHHHHHHHCCCEEEEEEEEEEEEEECCCCCCCEEEECCC
KDVAVEFFSLSKSYNMPGWRVGFCCGNKDLIHALARIKSYMDYGTFTPIQVAAIAALEGD
HHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHEEECCCCC
QSCVAEICEMYRQRRDVLVEGLGDIGWPVEKPRATMFVWAEIPEPYRAMGSLEFSKKLLI
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCHHHHHHHHH
EAGVAVSPGVGFGDYGDDHVRFALIENEQRTRQAMRGIKKMFRQDGLLD
HCCCEECCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MCPPSFIPTQGVVVETDFQRIRRLPPYVFNIVGEMKAAARARGEDIIDFSMGNPDQPTPK
CCCCCCCCCCCEEEECCHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHH
HIVDKLTETAQRGDTHRYSQSRGIPRLRKAMTDWYQRRYEVDLDPESEAIVTIGSKEGLA
HHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHEECCCCCCCCEEEEECCCCCCE
HLALATMGPGDTVLVPNPSYPIHPYGFVISNADIRHVPMVKGVDFFVELERAIKESWPKP
EEEEEECCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
KMLVLNFPGNPTAQCVELEFFEKVVAIAREHQIWVVHDIAYADIVFDGYKAPSILQVEGA
CEEEEECCCCCCHHEEHHHHHHHHHHHHHCCCEEEEEEEEEEEEEECCCCCCCEEEECCC
KDVAVEFFSLSKSYNMPGWRVGFCCGNKDLIHALARIKSYMDYGTFTPIQVAAIAALEGD
HHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHEEECCCCC
QSCVAEICEMYRQRRDVLVEGLGDIGWPVEKPRATMFVWAEIPEPYRAMGSLEFSKKLLI
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCHHHHHCCHHHHHHHHH
EAGVAVSPGVGFGDYGDDHVRFALIENEQRTRQAMRGIKKMFRQDGLLD
HCCCEECCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Pyridoxal Phosphate. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]