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The map label for this gene is xerD [H]

Identifier: 110833664

GI number: 110833664

Start: 895247

End: 896185

Strand: Direct

Name: xerD [H]

Synonym: ABO_0803

Alternate gene names: 110833664

Gene position: 895247-896185 (Clockwise)

Preceding gene: 110833662

Following gene: 110833665

Centisome position: 28.69

GC content: 57.72

Gene sequence:

>939_bases
ATGGTAACGGCAATCGATGGACAGCTCACCGAGGACCACCGCCGGCTGATTGATAGCTGGCTGGATCAGCAGTGGCTGGA
AAAAGGACTGAGTGAGCATAGTTTGTCTAATTATCGTCGCGACCTCAGCCAGTTGGCTTGCTGGTTGCAAGGGCAGCGGG
TAGCCCTGCTCGGTTGCGAGCGTTATCAACTGCTGGAGTTTTTGGCCTACCGGCACCAGCAGGGCCTCAGTGCCCGCTCA
GTGGCTCGTCAGTTGTCTGCGGTGAAAAGCTTTTACCGTTGGCTTAAGCGCGAAGGGCGTATTAGTGAAGATCCTGCCCT
GCTGATTGAGCGTCCCAAACTGGGGCGGCCGTTACCGAAAACGCTGAGCGAAGCGGATGTGGAGGCGCTGTTGGCGGCGC
CGGACCTGTCCACCCCCTTAGGGTTGCGCGACCGGGCCATGCTGGAGGTGTTGTACGCCACCGGCTTACGGGTCACTGAA
TTGGTGACGTTGACGCAAAGTCAGGTAAACCCCCGCCAAGGCGTGATTCGTGTGATAGGCAAGGGCGACAAGGAACGCTT
GGTGCCGTTGGGCGAAGAGGCACTGCACTGGCTGGAGCGTTATCTGCGTGAAGGACGGGCGTTGCTGATGGGGGGGGCTG
CAACGCCTGGCAACCAGGAGCTACTGTTTCCCAGCCGCCGTGGCACCTGCATGACCCGACAGACATTCTGGCATCGAATC
AAGCAGCTAGCAGTGGTCGCAGGGGTGCAAAAAAAGCTCTCTCCCCATACACTGCGGCATGCTTTTGCCACTCACTTGTT
GAATCACGGTGCAGATTTGCGGGTGGTGCAATTGTTGTTGGGCCATTCGGATCTCTCGACCACGCAAATTTATACCCATG
TGGCGCAGCAGCGGTTACAAGACGTATACCAGAAACATCACCCTCGATCGGGAACTTGA

Upstream 100 bases:

>100_bases
CGGGTGTGGGGGTAATATTTAGTAAAACCGCCCACGGATATCCATGGTAATGCCCGCGTAACACGTTGTTTTCTCTTTTT
GCATAAGGCTTGATGGCGTC

Downstream 100 bases:

>100_bases
GCCTGTTGGCGGGTTCTTACGGTTAAGAGAAGGAGTAACGACACAATGAAAAAAGGTTTGCTGTTTGTATTATTGGGGCT
GATGACCGCCTGTGGGGCCA

Product: integrase/recombinase XerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MVTAIDGQLTEDHRRLIDSWLDQQWLEKGLSEHSLSNYRRDLSQLACWLQGQRVALLGCERYQLLEFLAYRHQQGLSARS
VARQLSAVKSFYRWLKREGRISEDPALLIERPKLGRPLPKTLSEADVEALLAAPDLSTPLGLRDRAMLEVLYATGLRVTE
LVTLTQSQVNPRQGVIRVIGKGDKERLVPLGEEALHWLERYLREGRALLMGGAATPGNQELLFPSRRGTCMTRQTFWHRI
KQLAVVAGVQKKLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQRLQDVYQKHHPRSGT

Sequences:

>Translated_312_residues
MVTAIDGQLTEDHRRLIDSWLDQQWLEKGLSEHSLSNYRRDLSQLACWLQGQRVALLGCERYQLLEFLAYRHQQGLSARS
VARQLSAVKSFYRWLKREGRISEDPALLIERPKLGRPLPKTLSEADVEALLAAPDLSTPLGLRDRAMLEVLYATGLRVTE
LVTLTQSQVNPRQGVIRVIGKGDKERLVPLGEEALHWLERYLREGRALLMGGAATPGNQELLFPSRRGTCMTRQTFWHRI
KQLAVVAGVQKKLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQRLQDVYQKHHPRSGT
>Mature_312_residues
MVTAIDGQLTEDHRRLIDSWLDQQWLEKGLSEHSLSNYRRDLSQLACWLQGQRVALLGCERYQLLEFLAYRHQQGLSARS
VARQLSAVKSFYRWLKREGRISEDPALLIERPKLGRPLPKTLSEADVEALLAAPDLSTPLGLRDRAMLEVLYATGLRVTE
LVTLTQSQVNPRQGVIRVIGKGDKERLVPLGEEALHWLERYLREGRALLMGGAATPGNQELLFPSRRGTCMTRQTFWHRI
KQLAVVAGVQKKLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQRLQDVYQKHHPRSGT

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=295, Percent_Identity=59.6610169491525, Blast_Score=335, Evalue=2e-93,
Organism=Escherichia coli, GI1790244, Length=286, Percent_Identity=38.1118881118881, Blast_Score=186, Evalue=1e-48,
Organism=Escherichia coli, GI1790768, Length=189, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790767, Length=186, Percent_Identity=26.3440860215054, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35456; Mature: 35456

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTAIDGQLTEDHRRLIDSWLDQQWLEKGLSEHSLSNYRRDLSQLACWLQGQRVALLGCE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCH
RYQLLEFLAYRHQQGLSARSVARQLSAVKSFYRWLKREGRISEDPALLIERPKLGRPLPK
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEECCCCCCCCHH
TLSEADVEALLAAPDLSTPLGLRDRAMLEVLYATGLRVTELVTLTQSQVNPRQGVIRVIG
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCC
KGDKERLVPLGEEALHWLERYLREGRALLMGGAATPGNQELLFPSRRGTCMTRQTFWHRI
CCCHHHCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCEECCCCCCCCHHHHHHHHHH
KQLAVVAGVQKKLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQRLQ
HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
DVYQKHHPRSGT
HHHHHCCCCCCC
>Mature Secondary Structure
MVTAIDGQLTEDHRRLIDSWLDQQWLEKGLSEHSLSNYRRDLSQLACWLQGQRVALLGCE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCH
RYQLLEFLAYRHQQGLSARSVARQLSAVKSFYRWLKREGRISEDPALLIERPKLGRPLPK
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEECCCCCCCCHH
TLSEADVEALLAAPDLSTPLGLRDRAMLEVLYATGLRVTELVTLTQSQVNPRQGVIRVIG
HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCC
KGDKERLVPLGEEALHWLERYLREGRALLMGGAATPGNQELLFPSRRGTCMTRQTFWHRI
CCCHHHCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCEECCCCCCCCHHHHHHHHHH
KQLAVVAGVQKKLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAQQRLQ
HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
DVYQKHHPRSGT
HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]