| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is yvbT [H]
Identifier: 110833537
GI number: 110833537
Start: 750341
End: 751357
Strand: Direct
Name: yvbT [H]
Synonym: ABO_0676
Alternate gene names: 110833537
Gene position: 750341-751357 (Clockwise)
Preceding gene: 110833536
Following gene: 110833541
Centisome position: 24.05
GC content: 58.7
Gene sequence:
>1017_bases ATGGGAGTATGCATTTTGTCTGTAAGCGTACCGTTTTCATTGCTGGAGCTAGCGTCGATCCGTGAGGGAGACTCCGTTGG GCAGACGTTGGCTAACAGTGTGGCTTATGCACGCCATGCAGAGTCGTTGGGGTTTCAGCGGTTTTGGCTGGCGGAGCACC ATAATATGCAGGGGATCAGCAGTGCAGCTACCTCGGTGCTGGTTGGGCATATTGCCGGCGCCACCGAGTCCATTCGGGTC GGGTCTGGCGGGGTGATGTTGCCGAATCACCCGCCGTTAGTGATTGCGGAGCAATTTGGAACGCTGGAGATTTTGTACCC CGGTCGGATTGATTTGGGGTTGGGCCGCGCACCGGGAACCGACCCGATGACCAGCCGCGCCCTGCGCCGTGAAGGTCTTG GGGCTGAGCAGTTCCCCGATGATGTGGCCGAGCTACAGCGCTTGCTGGGGCCACTGGATACGTCACAGGGGGTTAATGCG ATTCCCGGCGCTGGCACTCAGGTACCGATCTGGCTACTGGGCTCCAGTTTGTACAGCGCCAAGCTGGCAGCGCAGCGGGG GTTGCCCTATGCCTTTGCCGGGCATTTTGCGCCGCGACTGTACCGTGAGGCGCTGCGTATCTATCGGGATCAATTTCAGC CCTCTGCCCAGCTGAGCAAACCCTACGCCATGTTGGCGTTGCCTGCGGTGCCGGCGGACTCCGACGAAGAGGCTCATTAC CTGACCACCACCAGTTACCAACGTATTCTTGCTTTGTTTCGTGGCCAGCCGTTATGGATGAAACCGCCGGTGCAAAGCAT GGACGGCTTGTGGAATCCACAAGAGGAAGCAGGGGTAAAAGATTTCCTGGGCTTACAGTTGCTGGGAACGGCAGCCTCCA TGCAGGGGCAGCTGGATCAGCTGCTGGACTCCGTGGAGGTGGATGAGTTGATGGTGACGGTGGATCTTTATGATCCGGTG AAGCGTCGTCATGCGTTGGATATTCTGGCGTCGTTGGCGCAGTTTCAGGCGGTGTGA
Upstream 100 bases:
>100_bases CATTAGCATGAGCCCGTGGTGCGGCTATACGGCCTGAATCGTGTAGGTTACTTTGTTGACGTGAATCTTCGGGTTTAACA CCATTCATAGTGCCGGCGTT
Downstream 100 bases:
>100_bases TGCGTTTTAGTTTTCACTAAGGGCGCTTGTGAGGTCGTATTACCCCTTTCGCGCTCTCGGTGCCCTTGGGTCAATCTGGC CTACGGTCTGCGGCTGCTGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 338; Mature: 337
Protein sequence:
>338_residues MGVCILSVSVPFSLLELASIREGDSVGQTLANSVAYARHAESLGFQRFWLAEHHNMQGISSAATSVLVGHIAGATESIRV GSGGVMLPNHPPLVIAEQFGTLEILYPGRIDLGLGRAPGTDPMTSRALRREGLGAEQFPDDVAELQRLLGPLDTSQGVNA IPGAGTQVPIWLLGSSLYSAKLAAQRGLPYAFAGHFAPRLYREALRIYRDQFQPSAQLSKPYAMLALPAVPADSDEEAHY LTTTSYQRILALFRGQPLWMKPPVQSMDGLWNPQEEAGVKDFLGLQLLGTAASMQGQLDQLLDSVEVDELMVTVDLYDPV KRRHALDILASLAQFQAV
Sequences:
>Translated_338_residues MGVCILSVSVPFSLLELASIREGDSVGQTLANSVAYARHAESLGFQRFWLAEHHNMQGISSAATSVLVGHIAGATESIRV GSGGVMLPNHPPLVIAEQFGTLEILYPGRIDLGLGRAPGTDPMTSRALRREGLGAEQFPDDVAELQRLLGPLDTSQGVNA IPGAGTQVPIWLLGSSLYSAKLAAQRGLPYAFAGHFAPRLYREALRIYRDQFQPSAQLSKPYAMLALPAVPADSDEEAHY LTTTSYQRILALFRGQPLWMKPPVQSMDGLWNPQEEAGVKDFLGLQLLGTAASMQGQLDQLLDSVEVDELMVTVDLYDPV KRRHALDILASLAQFQAV >Mature_337_residues GVCILSVSVPFSLLELASIREGDSVGQTLANSVAYARHAESLGFQRFWLAEHHNMQGISSAATSVLVGHIAGATESIRVG SGGVMLPNHPPLVIAEQFGTLEILYPGRIDLGLGRAPGTDPMTSRALRREGLGAEQFPDDVAELQRLLGPLDTSQGVNAI PGAGTQVPIWLLGSSLYSAKLAAQRGLPYAFAGHFAPRLYREALRIYRDQFQPSAQLSKPYAMLALPAVPADSDEEAHYL TTTSYQRILALFRGQPLWMKPPVQSMDGLWNPQEEAGVKDFLGLQLLGTAASMQGQLDQLLDSVEVDELMVTVDLYDPVK RRHALDILASLAQFQAV
Specific function: Unknown
COG id: COG2141
COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To bacterial alkanal monooxygenase alpha and beta chains [H]
Homologues:
Organism=Escherichia coli, GI1789551, Length=321, Percent_Identity=51.0903426791277, Blast_Score=330, Evalue=9e-92,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011251 - InterPro: IPR016048 - InterPro: IPR019949 [H]
Pfam domain/function: PF00296 Bac_luciferase [H]
EC number: NA
Molecular weight: Translated: 36555; Mature: 36424
Theoretical pI: Translated: 5.15; Mature: 5.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVCILSVSVPFSLLELASIREGDSVGQTLANSVAYARHAESLGFQRFWLAEHHNMQGIS CCEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHH SAATSVLVGHIAGATESIRVGSGGVMLPNHPPLVIAEQFGTLEILYPGRIDLGLGRAPGT HHHHHHHHHHHCCCCCEEEECCCCEECCCCCCEEEEECCCCEEEEECCEEEECCCCCCCC DPMTSRALRREGLGAEQFPDDVAELQRLLGPLDTSQGVNAIPGAGTQVPIWLLGSSLYSA CHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCHHHHH KLAAQRGLPYAFAGHFAPRLYREALRIYRDQFQPSAQLSKPYAMLALPAVPADSDEEAHY HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEECCCCCCCCCCCEE LTTTSYQRILALFRGQPLWMKPPVQSMDGLWNPQEEAGVKDFLGLQLLGTAASMQGQLDQ EEHHHHHHHHHHHCCCCCEECCCHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHH LLDSVEVDELMVTVDLYDPVKRRHALDILASLAQFQAV HHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure GVCILSVSVPFSLLELASIREGDSVGQTLANSVAYARHAESLGFQRFWLAEHHNMQGIS CEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHH SAATSVLVGHIAGATESIRVGSGGVMLPNHPPLVIAEQFGTLEILYPGRIDLGLGRAPGT HHHHHHHHHHHCCCCCEEEECCCCEECCCCCCEEEEECCCCEEEEECCEEEECCCCCCCC DPMTSRALRREGLGAEQFPDDVAELQRLLGPLDTSQGVNAIPGAGTQVPIWLLGSSLYSA CHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCHHHHH KLAAQRGLPYAFAGHFAPRLYREALRIYRDQFQPSAQLSKPYAMLALPAVPADSDEEAHY HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEEECCCCCCCCCCCEE LTTTSYQRILALFRGQPLWMKPPVQSMDGLWNPQEEAGVKDFLGLQLLGTAASMQGQLDQ EEHHHHHHHHHHHCCCCCEECCCHHHHCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHH LLDSVEVDELMVTVDLYDPVKRRHALDILASLAQFQAV HHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]