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The map label for this gene is secF [H]

Identifier: 110833365

GI number: 110833365

Start: 553868

End: 554791

Strand: Direct

Name: secF [H]

Synonym: ABO_0504

Alternate gene names: 110833365

Gene position: 553868-554791 (Clockwise)

Preceding gene: 110833364

Following gene: 110833366

Centisome position: 17.75

GC content: 52.27

Gene sequence:

>924_bases
ATGAGTAAAGCACCCATGAACATCAATTTTATGGCCGCCCGCAAACCGCTGGGTGTTCTGTCGCTGGCGTTGGTAATTAT
TTCCGTCGTATTGTTGCTGACCCGAGGGCTCAACCTGGGCTTGGACTTTACCGGTGGTACGACGGTCGTGGTGAAAAGCC
CGACAGATGTGGAGCTGTCCCAAGCCCGTGATGATCTTACTGAGGCCGGCTTCGGCGATGCCGTTGTGCAGCATTACGGC
TCACCTAAGGAGGTGAATATCCGTGTTGCACCCAAGGACGATGCGGATGCGGATAAAGTCGGCCAGAATGTCTTCAATGT
GCTTAAAGAGCACAATGCAGATCTGGAACTACTGAAAGTAGAGTTTGTTGGTCCTCAGGTGGGTGACGAACTTCGTGATG
AATCCGGCACCGCCATGCTATTGGCCCTTGGCTTGATGATGCTGTACGTGTGGTTTCGGTTCTCCAACAAGTTCGGTGTA
GCTACCGTACTTGCACTGTTTCACGATGTGATCATTGTGCTGGGGTTGTTTGCACTGATTCAGTGGCCTTTCGACCTGAC
GGTGCTGGCGGCGGTGCTGGCGCTGATCGGTTACTCGCTTAACGACTCCATCGTGGTGGCTGACCGGATACGGGAAGATT
TTCGCAGTACCCGGGAGACGGATCCGGTGGCTATCATTAATGGTGCGGTGAACCAGACCTTTACCCGGACGATTAACACC
TCGGTTACTACTTTGCTGGTATTGGTGGCGTTGTACTTCTTTGGTGGCGAAGTGATGCGAGCTTTCTCTGAGGCATTGCT
GGTGGGGGTTTTAGTGGGTACCTATTCGTCCATCTATGTGGTGAGCAACATCCTCTTCATGATGAAGGTCAGCAAGGAAG
ACTTTATGATTCCGGAGCCGGAAGAAGTGGATGAAATGCCGTAA

Upstream 100 bases:

>100_bases
ACCTCCATGTTCACGGCGATTATCGGTACCCGTGCCATGGCAGAAATGATTTACGGTCGAGGCGCTCGCGCCCCGAGCAA
ATTGAGCATCTGAGGCGGTT

Downstream 100 bases:

>100_bases
CGGTAATGGATCGTTAATAGTGGTTAATCGATAGTGAAAGGCCGTGACGTTGTCACGGCCTTTTTGTTTTTGGGTTGGCG
GTGGAAATAGCGCAATAAGT

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MSKAPMNINFMAARKPLGVLSLALVIISVVLLLTRGLNLGLDFTGGTTVVVKSPTDVELSQARDDLTEAGFGDAVVQHYG
SPKEVNIRVAPKDDADADKVGQNVFNVLKEHNADLELLKVEFVGPQVGDELRDESGTAMLLALGLMMLYVWFRFSNKFGV
ATVLALFHDVIIVLGLFALIQWPFDLTVLAAVLALIGYSLNDSIVVADRIREDFRSTRETDPVAIINGAVNQTFTRTINT
SVTTLLVLVALYFFGGEVMRAFSEALLVGVLVGTYSSIYVVSNILFMMKVSKEDFMIPEPEEVDEMP

Sequences:

>Translated_307_residues
MSKAPMNINFMAARKPLGVLSLALVIISVVLLLTRGLNLGLDFTGGTTVVVKSPTDVELSQARDDLTEAGFGDAVVQHYG
SPKEVNIRVAPKDDADADKVGQNVFNVLKEHNADLELLKVEFVGPQVGDELRDESGTAMLLALGLMMLYVWFRFSNKFGV
ATVLALFHDVIIVLGLFALIQWPFDLTVLAAVLALIGYSLNDSIVVADRIREDFRSTRETDPVAIINGAVNQTFTRTINT
SVTTLLVLVALYFFGGEVMRAFSEALLVGVLVGTYSSIYVVSNILFMMKVSKEDFMIPEPEEVDEMP
>Mature_306_residues
SKAPMNINFMAARKPLGVLSLALVIISVVLLLTRGLNLGLDFTGGTTVVVKSPTDVELSQARDDLTEAGFGDAVVQHYGS
PKEVNIRVAPKDDADADKVGQNVFNVLKEHNADLELLKVEFVGPQVGDELRDESGTAMLLALGLMMLYVWFRFSNKFGVA
TVLALFHDVIIVLGLFALIQWPFDLTVLAAVLALIGYSLNDSIVVADRIREDFRSTRETDPVAIINGAVNQTFTRTINTS
VTTLLVLVALYFFGGEVMRAFSEALLVGVLVGTYSSIYVVSNILFMMKVSKEDFMIPEPEEVDEMP

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=281, Percent_Identity=41.2811387900356, Blast_Score=221, Evalue=3e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 33553; Mature: 33421

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKAPMNINFMAARKPLGVLSLALVIISVVLLLTRGLNLGLDFTGGTTVVVKSPTDVELS
CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEEECCCCCHHH
QARDDLTEAGFGDAVVQHYGSPKEVNIRVAPKDDADADKVGQNVFNVLKEHNADLELLKV
HHHHHHHHCCCCHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
EFVGPQVGDELRDESGTAMLLALGLMMLYVWFRFSNKFGVATVLALFHDVIIVLGLFALI
EECCCHHCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
QWPFDLTVLAAVLALIGYSLNDSIVVADRIREDFRSTRETDPVAIINGAVNQTFTRTINT
HCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHH
SVTTLLVLVALYFFGGEVMRAFSEALLVGVLVGTYSSIYVVSNILFMMKVSKEDFMIPEP
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
EEVDEMP
HHCCCCC
>Mature Secondary Structure 
SKAPMNINFMAARKPLGVLSLALVIISVVLLLTRGLNLGLDFTGGTTVVVKSPTDVELS
CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEEEECCCCCHHH
QARDDLTEAGFGDAVVQHYGSPKEVNIRVAPKDDADADKVGQNVFNVLKEHNADLELLKV
HHHHHHHHCCCCHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEE
EFVGPQVGDELRDESGTAMLLALGLMMLYVWFRFSNKFGVATVLALFHDVIIVLGLFALI
EECCCHHCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
QWPFDLTVLAAVLALIGYSLNDSIVVADRIREDFRSTRETDPVAIINGAVNQTFTRTINT
HCCCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHH
SVTTLLVLVALYFFGGEVMRAFSEALLVGVLVGTYSSIYVVSNILFMMKVSKEDFMIPEP
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
EEVDEMP
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]