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The map label for this gene is secD [H]

Identifier: 110833364

GI number: 110833364

Start: 551947

End: 553860

Strand: Direct

Name: secD [H]

Synonym: ABO_0503

Alternate gene names: 110833364

Gene position: 551947-553860 (Clockwise)

Preceding gene: 110833363

Following gene: 110833365

Centisome position: 17.69

GC content: 56.32

Gene sequence:

>1914_bases
ATGATTAAGAAATCGGCACTACTGGAAAGAACTATGACCCGCTATCCACGCTGGAAATTTTTCCTGCTTATGGCTGCACT
CGTTGTTTGCAGCCTTTATGCGCTTCCTAATTTGTACCCGGATGCGCCTGCGATTCAGATCAGTCATTCCGAGGCTGGTG
GCGAAGTGTCGGCTGTGGCTAGGCAGCGCGTATTAAGTGCCCTGGATGCCGCCGGCCTGGCCCATGGAGACGGTGAGGTT
GTTGGTAGTTCATTGCTGGTGCGTATGAACGATACCGAAGCTCAGCTTCGCGCCAAGGATATTGCAGCGTCTACTTTGGG
CGATAATTATGTGGTGGCGTTGAACTTGGCGGCAACCACTCCTCAGTGGTTGCGTGATATCGGCGCTAGCCCCATGAATT
TGGGGTTGGATCTGCGTGGCGGGGTTCACTTCTTGCTGCAGGTGGACATGGATTCGGTGGTGAAGAGCCGCATGGAAGCC
TGGGAAGGCACCGCTAAGTTGACCCTGCGTGACGCAGGGGTGCGTTATCGCGAGGTGTCTGTGGATGGCACAACCCTGAT
CGCCACCTTTGGAGATCAGGTTGCTGCAGATGCAGCGCGGGCGCCATTGCGCCAGGCGCTGGACAAGCTGGCCATGCAAC
CGGCCGGAGATAGCCCCAGAATTGTTATGACCCTGAACGAAACGGCCCTGAAAGAAATGCAGGACTACGCCGTAGACCAG
AACCGCACCGCTTTGAACAAAAGGGTGAACGAACTGGGTGTGGCGGAAGCGGTGGTTCAGCGTCAGGGGGCAGACCGTAT
CGTAGTGCAGCTGCCAGGCATCCAGGACGCGGCCACCGCGCGTCGGATTTTGGGCCGCACCGCGACGCTGGAGTTTCGTT
TGGTGGACAATAGCGTGTCCTCCGCTCGCCTACGTTCTGGCATGGCGCCGCCGGGGTTGGAGTTTTTTCCGTTCAAGGGG
CAAGAAGGCCGGATAGTGGCCTTGAACAAGTCCAGCATTGCCACCGGGGATCAGGTGATTGACGCCAAGATGGGCTTTGA
TCAGCAGAACGGTCAACCGGAAGTCAACGTAACACTGGATTCCGATGGCGCCCGCCGTATGCAGCGTGTTACCGGCAAGA
ACGTGGGTAACCCCATGGGGGTGCTGTTCATCGAAACCAAGACCGACGTGAAAAAGGTGATCGACGAAGACGGCAACAGC
GTTGAGCAGATGACCAGCAGCACTGATAAGTACGTCATCAACGTGGCGACTATTCAGAGCACCCTGGGTAGCCGTTTCCG
GATTACCGGGCTGGATAACCCGGCGGAAGCCTCCGAATTGGCACTGCTGCTGCGTGCCGGCTCACTGGCTGCGCCGGTGA
GTATCGTTGAAGAGCGTACGGTTGGGCCGAGCTTGGGCGCGGAGAATATTGAAGCGGGCCTTAAGTCCATGGCTTTAGGG
CTGGCATTAGTGCTGGCCTTCATGGTGCTTTGGTACAAAGTATTTGGCTTGATTGCTAATGTGGCGCTGCTCGGTAACTT
GGTAATCATTGTTGGTGTTATGTCGTTGATTCCCGGCGCTACCATGACTCTGCCGGGTATTGCCGGGATCGTACTGACGG
TGGGTATGGCGGTAGACGCTAACGTTCTGATCTTCGAACGTATTCGTGAAGATCTGCGCCGGGGTCTGAGTCCACGCCAG
GCTATCGAAGAAGGTTACGCCCGTGCATTTACCACTATTCTTGATGCCAACATTACGACCCTGATTGTGGCGGTGATTTT
GTTTGCAGCAGGGACCGGTTCGGTACAGGGTTTTGCGGTGACCTTGTTCATTGGCATCCTCACCTCCATGTTCACGGCGA
TTATCGGTACCCGTGCCATGGCAGAAATGATTTACGGTCGAGGCGCTCGCGCCCCGAGCAAATTGAGCATCTGA

Upstream 100 bases:

>100_bases
AAAATCCAATGTATCGAGCGATTAATTAATCATATACGCCTTGTGGGTTGCTCCGATCAAGGCCCGTTGATGTCTTTTTT
AGGCGTTTAATGCACTGTTT

Downstream 100 bases:

>100_bases
GGCGGTTATGAGTAAAGCACCCATGAACATCAATTTTATGGCCGCCCGCAAACCGCTGGGTGTTCTGTCGCTGGCGTTGG
TAATTATTTCCGTCGTATTG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 637; Mature: 637

Protein sequence:

>637_residues
MIKKSALLERTMTRYPRWKFFLLMAALVVCSLYALPNLYPDAPAIQISHSEAGGEVSAVARQRVLSALDAAGLAHGDGEV
VGSSLLVRMNDTEAQLRAKDIAASTLGDNYVVALNLAATTPQWLRDIGASPMNLGLDLRGGVHFLLQVDMDSVVKSRMEA
WEGTAKLTLRDAGVRYREVSVDGTTLIATFGDQVAADAARAPLRQALDKLAMQPAGDSPRIVMTLNETALKEMQDYAVDQ
NRTALNKRVNELGVAEAVVQRQGADRIVVQLPGIQDAATARRILGRTATLEFRLVDNSVSSARLRSGMAPPGLEFFPFKG
QEGRIVALNKSSIATGDQVIDAKMGFDQQNGQPEVNVTLDSDGARRMQRVTGKNVGNPMGVLFIETKTDVKKVIDEDGNS
VEQMTSSTDKYVINVATIQSTLGSRFRITGLDNPAEASELALLLRAGSLAAPVSIVEERTVGPSLGAENIEAGLKSMALG
LALVLAFMVLWYKVFGLIANVALLGNLVIIVGVMSLIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREDLRRGLSPRQ
AIEEGYARAFTTILDANITTLIVAVILFAAGTGSVQGFAVTLFIGILTSMFTAIIGTRAMAEMIYGRGARAPSKLSI

Sequences:

>Translated_637_residues
MIKKSALLERTMTRYPRWKFFLLMAALVVCSLYALPNLYPDAPAIQISHSEAGGEVSAVARQRVLSALDAAGLAHGDGEV
VGSSLLVRMNDTEAQLRAKDIAASTLGDNYVVALNLAATTPQWLRDIGASPMNLGLDLRGGVHFLLQVDMDSVVKSRMEA
WEGTAKLTLRDAGVRYREVSVDGTTLIATFGDQVAADAARAPLRQALDKLAMQPAGDSPRIVMTLNETALKEMQDYAVDQ
NRTALNKRVNELGVAEAVVQRQGADRIVVQLPGIQDAATARRILGRTATLEFRLVDNSVSSARLRSGMAPPGLEFFPFKG
QEGRIVALNKSSIATGDQVIDAKMGFDQQNGQPEVNVTLDSDGARRMQRVTGKNVGNPMGVLFIETKTDVKKVIDEDGNS
VEQMTSSTDKYVINVATIQSTLGSRFRITGLDNPAEASELALLLRAGSLAAPVSIVEERTVGPSLGAENIEAGLKSMALG
LALVLAFMVLWYKVFGLIANVALLGNLVIIVGVMSLIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREDLRRGLSPRQ
AIEEGYARAFTTILDANITTLIVAVILFAAGTGSVQGFAVTLFIGILTSMFTAIIGTRAMAEMIYGRGARAPSKLSI
>Mature_637_residues
MIKKSALLERTMTRYPRWKFFLLMAALVVCSLYALPNLYPDAPAIQISHSEAGGEVSAVARQRVLSALDAAGLAHGDGEV
VGSSLLVRMNDTEAQLRAKDIAASTLGDNYVVALNLAATTPQWLRDIGASPMNLGLDLRGGVHFLLQVDMDSVVKSRMEA
WEGTAKLTLRDAGVRYREVSVDGTTLIATFGDQVAADAARAPLRQALDKLAMQPAGDSPRIVMTLNETALKEMQDYAVDQ
NRTALNKRVNELGVAEAVVQRQGADRIVVQLPGIQDAATARRILGRTATLEFRLVDNSVSSARLRSGMAPPGLEFFPFKG
QEGRIVALNKSSIATGDQVIDAKMGFDQQNGQPEVNVTLDSDGARRMQRVTGKNVGNPMGVLFIETKTDVKKVIDEDGNS
VEQMTSSTDKYVINVATIQSTLGSRFRITGLDNPAEASELALLLRAGSLAAPVSIVEERTVGPSLGAENIEAGLKSMALG
LALVLAFMVLWYKVFGLIANVALLGNLVIIVGVMSLIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREDLRRGLSPRQ
AIEEGYARAFTTILDANITTLIVAVILFAAGTGSVQGFAVTLFIGILTSMFTAIIGTRAMAEMIYGRGARAPSKLSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=631, Percent_Identity=49.445324881141, Blast_Score=558, Evalue=1e-160,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 68027; Mature: 68027

Theoretical pI: Translated: 6.83; Mature: 6.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKSALLERTMTRYPRWKFFLLMAALVVCSLYALPNLYPDAPAIQISHSEAGGEVSAVA
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHH
RQRVLSALDAAGLAHGDGEVVGSSLLVRMNDTEAQLRAKDIAASTLGDNYVVALNLAATT
HHHHHHHHHHHCCCCCCCHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCC
PQWLRDIGASPMNLGLDLRGGVHFLLQVDMDSVVKSRMEAWEGTAKLTLRDAGVRYREVS
HHHHHHCCCCCCCCCEEECCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCEEEEEE
VDGTTLIATFGDQVAADAARAPLRQALDKLAMQPAGDSPRIVMTLNETALKEMQDYAVDQ
CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHCCC
NRTALNKRVNELGVAEAVVQRQGADRIVVQLPGIQDAATARRILGRTATLEFRLVDNSVS
CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCEEEEEEEECCCHH
SARLRSGMAPPGLEFFPFKGQEGRIVALNKSSIATGDQVIDAKMGFDQQNGQPEVNVTLD
HHHHHCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCHHEEHHCCCCCCCCCCCEEEEEC
SDGARRMQRVTGKNVGNPMGVLFIETKTDVKKVIDEDGNSVEQMTSSTDKYVINVATIQS
CCHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHCCCCCHHHHHHCCCCCEEEEHHHHHH
TLGSRFRITGLDNPAEASELALLLRAGSLAAPVSIVEERTVGPSLGAENIEAGLKSMALG
HHCCEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHH
LALVLAFMVLWYKVFGLIANVALLGNLVIIVGVMSLIPGATMTLPGIAGIVLTVGMAVDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
NVLIFERIREDLRRGLSPRQAIEEGYARAFTTILDANITTLIVAVILFAAGTGSVQGFAV
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHH
TLFIGILTSMFTAIIGTRAMAEMIYGRGARAPSKLSI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MIKKSALLERTMTRYPRWKFFLLMAALVVCSLYALPNLYPDAPAIQISHSEAGGEVSAVA
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHH
RQRVLSALDAAGLAHGDGEVVGSSLLVRMNDTEAQLRAKDIAASTLGDNYVVALNLAATT
HHHHHHHHHHHCCCCCCCHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCC
PQWLRDIGASPMNLGLDLRGGVHFLLQVDMDSVVKSRMEAWEGTAKLTLRDAGVRYREVS
HHHHHHCCCCCCCCCEEECCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCEEEEEE
VDGTTLIATFGDQVAADAARAPLRQALDKLAMQPAGDSPRIVMTLNETALKEMQDYAVDQ
CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHCCC
NRTALNKRVNELGVAEAVVQRQGADRIVVQLPGIQDAATARRILGRTATLEFRLVDNSVS
CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCEEEEEEEECCCHH
SARLRSGMAPPGLEFFPFKGQEGRIVALNKSSIATGDQVIDAKMGFDQQNGQPEVNVTLD
HHHHHCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCHHEEHHCCCCCCCCCCCEEEEEC
SDGARRMQRVTGKNVGNPMGVLFIETKTDVKKVIDEDGNSVEQMTSSTDKYVINVATIQS
CCHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHCCCCCHHHHHHCCCCCEEEEHHHHHH
TLGSRFRITGLDNPAEASELALLLRAGSLAAPVSIVEERTVGPSLGAENIEAGLKSMALG
HHCCEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHH
LALVLAFMVLWYKVFGLIANVALLGNLVIIVGVMSLIPGATMTLPGIAGIVLTVGMAVDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
NVLIFERIREDLRRGLSPRQAIEEGYARAFTTILDANITTLIVAVILFAAGTGSVQGFAV
CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHH
TLFIGILTSMFTAIIGTRAMAEMIYGRGARAPSKLSI
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]