| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
Click here to switch to the map view.
The map label for this gene is apr [H]
Identifier: 110681130
GI number: 110681130
Start: 3859192
End: 3860187
Strand: Direct
Name: apr [H]
Synonym: RD1_4002
Alternate gene names: 110681130
Gene position: 3859192-3860187 (Clockwise)
Preceding gene: 110681128
Following gene: 110681132
Centisome position: 93.37
GC content: 65.26
Gene sequence:
>996_bases ATGCGCGTGGCCGGGGCTGCGGGAGGATATCAACTGCTGGATGAAACCGATCTGGCCGGGCTTGATCTGACCATGCTGAC TTTCCGGATGCCCGACGGCATCACCGGACCCGAAGCCATCGCGGCGCTCGAAGCGGACGTGCCGACATCGACCGTGGGCA TCAACCACGCCTATAGGCTGCAGCAATCGACGAGTCCCGTGCAGACCCTCGACTATGCCAATGCGATGATGCGGTGGCAT GCGGATGGATGTCGCGCGCAGGTGCCAATGGGTGTGATTGACACGGGCATCGACACCGCCAGCCCTGCCCTGAACAGCGC ACGCATCATCACACGCGCGTTCTTTGAGGGCCCGGCTGCACCGGCTGCACATGGCACGGATGTCGCCTCGGTTCTGGCCA GCCCCAGCCGCCTGCAAGGGGTCACGATTTACGGCGCGAATGTCTTCGGGCAGCAGGACGCCCTCGGGCTGAAGGCGGGT GCGGACGCCTTGGTGCGTGCGCTTGACTGGCTGGCGGCGGAAGACGTGCGTTTTGTCAATCTGGCCCTCGCCGGGCCTTA CAACAAGCTGCTCGACCTTGCTGTGGAACGCTCGGTTGCGCGGGGTCTGATCCTTGTCGCCGCTGTTGGCAATGAAGGGC CAAACGTTGATCCGCTCTACCCCGCCGGATTTGACGGGGTGATTGCGGTGACCGCCGTGGATGCCGACGGGCGCATCTAT CGCAACGCAGTGCGTGGCCCGCATGTGGACATCGCCGCGCCCGGTGTCGACGTCCTCGTGCCATCCGGTGACAGCGTTCG GTTCGTGACAGGCACGTCGATCGCGACCCCGCTGGTCACGGCCCGACTGGCCGCTGATCCGACACTTGCCAGCGCACGCA GCGTTTCCGACGTGCGCAAGCGACTGGCCGCAACCAGTGCGGAACTTGGACCAAGCGGACGCGACCCGGTCTATGGCTAT GGGCTCGCGCTTGCCGAAGACGTCTGCGGCGGCTGA
Upstream 100 bases:
>100_bases CTGCGCGCCTTTGACAGACACCCGCGGCACAGGGGAGACAAATGTGGTCGGGCCGCGCAAGGTCATTGCGCTGGTTCCGG ATGCGCAGGCGCGCGATGCG
Downstream 100 bases:
>100_bases TCGCGGGCGCTTACATACACGCCGCCAGCGCCGTGGCGAGGTTCCCGATGAGCAGGGGATAAAGCGCCGGACCGGGTTCA AGGTCCGAACCAAGCGGGTC
Product: subtilisin carlsberg precursor, putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 331; Mature: 331
Protein sequence:
>331_residues MRVAGAAGGYQLLDETDLAGLDLTMLTFRMPDGITGPEAIAALEADVPTSTVGINHAYRLQQSTSPVQTLDYANAMMRWH ADGCRAQVPMGVIDTGIDTASPALNSARIITRAFFEGPAAPAAHGTDVASVLASPSRLQGVTIYGANVFGQQDALGLKAG ADALVRALDWLAAEDVRFVNLALAGPYNKLLDLAVERSVARGLILVAAVGNEGPNVDPLYPAGFDGVIAVTAVDADGRIY RNAVRGPHVDIAAPGVDVLVPSGDSVRFVTGTSIATPLVTARLAADPTLASARSVSDVRKRLAATSAELGPSGRDPVYGY GLALAEDVCGG
Sequences:
>Translated_331_residues MRVAGAAGGYQLLDETDLAGLDLTMLTFRMPDGITGPEAIAALEADVPTSTVGINHAYRLQQSTSPVQTLDYANAMMRWH ADGCRAQVPMGVIDTGIDTASPALNSARIITRAFFEGPAAPAAHGTDVASVLASPSRLQGVTIYGANVFGQQDALGLKAG ADALVRALDWLAAEDVRFVNLALAGPYNKLLDLAVERSVARGLILVAAVGNEGPNVDPLYPAGFDGVIAVTAVDADGRIY RNAVRGPHVDIAAPGVDVLVPSGDSVRFVTGTSIATPLVTARLAADPTLASARSVSDVRKRLAATSAELGPSGRDPVYGY GLALAEDVCGG >Mature_331_residues MRVAGAAGGYQLLDETDLAGLDLTMLTFRMPDGITGPEAIAALEADVPTSTVGINHAYRLQQSTSPVQTLDYANAMMRWH ADGCRAQVPMGVIDTGIDTASPALNSARIITRAFFEGPAAPAAHGTDVASVLASPSRLQGVTIYGANVFGQQDALGLKAG ADALVRALDWLAAEDVRFVNLALAGPYNKLLDLAVERSVARGLILVAAVGNEGPNVDPLYPAGFDGVIAVTAVDADGRIY RNAVRGPHVDIAAPGVDVLVPSGDSVRFVTGTSIATPLVTARLAADPTLASARSVSDVRKRLAATSAELGPSGRDPVYGY GLALAEDVCGG
Specific function: Subtilisin is an extracellular alkaline serine protease, it catalyzes the hydrolysis of proteins and peptide amides [H]
COG id: COG1404
COG function: function code O; Subtilisin-like serine proteases
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S8 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000209 - InterPro: IPR022398 - InterPro: IPR015500 [H]
Pfam domain/function: PF00082 Peptidase_S8 [H]
EC number: =3.4.21.62 [H]
Molecular weight: Translated: 34073; Mature: 34073
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: PS00137 SUBTILASE_HIS ; PS00138 SUBTILASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVAGAAGGYQLLDETDLAGLDLTMLTFRMPDGITGPEAIAALEADVPTSTVGINHAYRL CCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCHHHHHEEECCCCCCEECCCCEEEE QQSTSPVQTLDYANAMMRWHADGCRAQVPMGVIDTGIDTASPALNSARIITRAFFEGPAA CCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCC PAAHGTDVASVLASPSRLQGVTIYGANVFGQQDALGLKAGADALVRALDWLAAEDVRFVN CCCCCCHHHHHHCCHHHHCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEE LALAGPYNKLLDLAVERSVARGLILVAAVGNEGPNVDPLYPAGFDGVIAVTAVDADGRIY EEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCHHH RNAVRGPHVDIAAPGVDVLVPSGDSVRFVTGTSIATPLVTARLAADPTLASARSVSDVRK HHHCCCCCEEEECCCCEEEECCCCCEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHH RLAATSAELGPSGRDPVYGYGLALAEDVCGG HHHHHHHHCCCCCCCCCEEHHHHHHHHHCCC >Mature Secondary Structure MRVAGAAGGYQLLDETDLAGLDLTMLTFRMPDGITGPEAIAALEADVPTSTVGINHAYRL CCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCHHHHHEEECCCCCCEECCCCEEEE QQSTSPVQTLDYANAMMRWHADGCRAQVPMGVIDTGIDTASPALNSARIITRAFFEGPAA CCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCC PAAHGTDVASVLASPSRLQGVTIYGANVFGQQDALGLKAGADALVRALDWLAAEDVRFVN CCCCCCHHHHHHCCHHHHCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEE LALAGPYNKLLDLAVERSVARGLILVAAVGNEGPNVDPLYPAGFDGVIAVTAVDADGRIY EEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCHHH RNAVRGPHVDIAAPGVDVLVPSGDSVRFVTGTSIATPLVTARLAADPTLASARSVSDVRK HHHCCCCCEEEECCCCEEEECCCCCEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHH RLAATSAELGPSGRDPVYGYGLALAEDVCGG HHHHHHHHCCCCCCCCCEEHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 6420308; 9826175 [H]