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The map label for this gene is amyD [H]

Identifier: 110680891

GI number: 110680891

Start: 3628484

End: 3629461

Strand: Direct

Name: amyD [H]

Synonym: RD1_3742

Alternate gene names: 110680891

Gene position: 3628484-3629461 (Clockwise)

Preceding gene: 110680890

Following gene: 110680892

Centisome position: 87.79

GC content: 56.24

Gene sequence:

>978_bases
ATGGCCTTTGAGACAGGCCGCGTGACGACAGGTTTTGATACGTGGCGACCGGTGCTTTACGCCTATATGCTCTGGGCCAC
GGCACTTTGTGCAGCACAGGTCATCGTGAACGGTGAAAAGGGCAAACGCACACTTTTTGTGCTGCCTGCGGCTCTCTTTG
TGATCAGCCTTGTGGTCTTTCCGCTGCTCTTTGCGCTTTATATATCATTTACTGACTGGAACCTCGCGTCACCCAATGGG
CCGCAGCCAAACGGCTGGGACAATATGCGCGAGATGTGGAACGATACGTTTTACTGGAACGCATTGAAAAACATGGTGTA
TTACGTGCTGGCGGTCAGTGTGGAATATGTCATCGCCTTCGGTCTGGCCCTGCTGCTGAATGCGCAGATCAGGGCGCGCA
AGTTCTTTCGCGTGGTGTTTTTGCTGCCGCTGATGCTTAGCCCTGTGGCGGTGTCGTGGATGATCGGCAAGTCCATGCTG
GAGGTCCGTTTCGGCCCGATCTCGCGCGTGTTGCGCGAAATGGGCATTGAACCGAGCTTCTTCGGCACGCCGGAAATCGC
CCGTTTCATGATCATGGCCATGGACGCATGGACGTTTATTCCCTTCATGATGATCATGCTGCTGGCCGGTTTGCAGGCGC
TCCCGCGCGAGATCATCGAGGCCTCGAAAGTCGATGGCGCATCCGGCTGGCAAAGCTTTCGCGAAGTGATTTTCCCGCTG
ATGCTGCCCGTATCGGTGACCGCGATCGTGATCCGCATTATCTTCAAACTGAAACTGGCTGATATCATCATCAACGTGAC
CTCCGGCGGGCCGGGTGGGGCCACGGACAGCGTGACCAGTTTCATATTCCGCGAATACCGGGACCGCTCCAACGTGGGCT
ACGGGACCTTGCTGGCGATGATCTATCTGGTGCTGATCGTCATTTTTGTCACGCTCCTGCTGAAACTCGTGAGCCGCTGG
ATGGAGCGCCCCGCATGA

Upstream 100 bases:

>100_bases
TACGGTTACGGCGGATGCAATCTCGGATCAGCGCAGGCTGCTGGGTAAGGCGCTTGTGTGGGGGTCGGCGGCTTTGGTGT
TTGTGTTGGCCGCATGGCAG

Downstream 100 bases:

>100_bases
CCGCAGTATTCAAGGATCACGAGGGCGACCAGCGCATGCCGACGAAATGGTGGGCCAGTCGGATTGCAATTTACGCTGCC
CTGATCACATGGGCCTTTGT

Product: sugar ABC transporter, permease protein, putative

Products: ADP; phosphate; maltose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MAFETGRVTTGFDTWRPVLYAYMLWATALCAAQVIVNGEKGKRTLFVLPAALFVISLVVFPLLFALYISFTDWNLASPNG
PQPNGWDNMREMWNDTFYWNALKNMVYYVLAVSVEYVIAFGLALLLNAQIRARKFFRVVFLLPLMLSPVAVSWMIGKSML
EVRFGPISRVLREMGIEPSFFGTPEIARFMIMAMDAWTFIPFMMIMLLAGLQALPREIIEASKVDGASGWQSFREVIFPL
MLPVSVTAIVIRIIFKLKLADIIINVTSGGPGGATDSVTSFIFREYRDRSNVGYGTLLAMIYLVLIVIFVTLLLKLVSRW
MERPA

Sequences:

>Translated_325_residues
MAFETGRVTTGFDTWRPVLYAYMLWATALCAAQVIVNGEKGKRTLFVLPAALFVISLVVFPLLFALYISFTDWNLASPNG
PQPNGWDNMREMWNDTFYWNALKNMVYYVLAVSVEYVIAFGLALLLNAQIRARKFFRVVFLLPLMLSPVAVSWMIGKSML
EVRFGPISRVLREMGIEPSFFGTPEIARFMIMAMDAWTFIPFMMIMLLAGLQALPREIIEASKVDGASGWQSFREVIFPL
MLPVSVTAIVIRIIFKLKLADIIINVTSGGPGGATDSVTSFIFREYRDRSNVGYGTLLAMIYLVLIVIFVTLLLKLVSRW
MERPA
>Mature_324_residues
AFETGRVTTGFDTWRPVLYAYMLWATALCAAQVIVNGEKGKRTLFVLPAALFVISLVVFPLLFALYISFTDWNLASPNGP
QPNGWDNMREMWNDTFYWNALKNMVYYVLAVSVEYVIAFGLALLLNAQIRARKFFRVVFLLPLMLSPVAVSWMIGKSMLE
VRFGPISRVLREMGIEPSFFGTPEIARFMIMAMDAWTFIPFMMIMLLAGLQALPREIIEASKVDGASGWQSFREVIFPLM
LPVSVTAIVIRIIFKLKLADIIINVTSGGPGGATDSVTSFIFREYRDRSNVGYGTLLAMIYLVLIVIFVTLLLKLVSRWM
ERPA

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1790465, Length=265, Percent_Identity=25.2830188679245, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1789861, Length=205, Percent_Identity=26.3414634146341, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1787570, Length=238, Percent_Identity=26.0504201680672, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36707; Mature: 36576

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AFETGRVTTGFDTWRPVLYAYMLWATALCAAQVIVNGEKGKRTLFVLPAALFVISLVVF
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHH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HHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; maltose [Periplasm]; H2O [C]

Specific reaction: ATP + maltose [Periplasm] + H2O = ADP + phosphate + maltose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]