Click here to switch to the map view.

The map label for this gene is 110680850

Identifier: 110680850

GI number: 110680850

Start: 3565691

End: 3566935

Strand: Direct

Name: 110680850

Synonym: RD1_3699

Alternate gene names: NA

Gene position: 3565691-3566935 (Clockwise)

Preceding gene: 110680849

Following gene: 110680852

Centisome position: 86.27

GC content: 57.99

Gene sequence:

>1245_bases
TTGGCTGAAAGAATTTCACCGACATCTTTGCAACACAAACAAGAACATATCGAACAGCCCCAGCGGGGCGCGCAGAAGGC
GGACACCCTCGTTGAACTGGCAAAACTGGAACCGCTGACGGATGGTGGCCTGCGCACATCACAGCTGCTGGCGCAAACGC
TCGCCCTGGCACCCGACCATCATGAGGCGCGGGTGCTGCGCGAAAGGCTGCACCAGATGTTCGTGCCGCGCTGGCATTTC
CCGATGCTTGCCGACAAGACGCGCAACAACGCTTACGCGAGGGCCATAAACGCCAAGGTGAAGCCCGGTGACATCGTGCT
GGACATTGGCTGCGGCGCGGGTTTGACCGCCATGCTGGCAGCGCGTGCGGGTGCCAAACATGTCTATACCTGCGAACAAC
AGCCCCTGATCGCGCAAGCCGCCATGCAGGTGATCCGGGACAATGGCCTGAGTGATTGCATCACGGTCATCCCGAAACTG
TCGCATAATCTTGTTGTTGGTGTGGATATTCCGGAGCCGGCGGATGTCGTGATCTCGGAAATAGTCGATACCGTCCTGCT
TGGCGAAGGGGCGCTTGCCACTCTTACCCATGCCATGCACATGCTGGCCAAACCAAATGCACGCGCGATTCCGGAAAGTG
GCAAGCTGATCGCGCAACTCGTGCAAAGCGACGCATTGATGAACCTGATGCGCCCGACTGAGGCGGAAGAGTTTGACCTC
AGCGCCTTTCATCGCTTTGCCAGCGTCGCACAGCTTACGCCGAACGATGTCGCGGCCTGCGCGCTTACCCCTTTGGGACC
GGCATCAGACTTGTTCGGGTTTGATTTCACCATACCGACTGTACGATCCGCGCGTACGACAACAAACCTTGCCTGCGGTC
AAACCGGCACCATTCATGCCGTTTTTGTGAGTTTCGAGATGGAGCTGGCGCCTGATATTGTGTTGTCAAATGGCCTGCAA
TCGGATGGGCATTGGGGACGAACGGCATTCCTGCTTGATCATCCACGACCTGCAGCGGACGGGACCCGATTGACAGTCAC
CGCGCAACACGACGCCGCCCAATTGAGCCTGACAATCGCTGGCGATGAACCCGCTCTCAGGGCTTCGGAAAACGCAACTG
GCTGGCTGAAGCGCGCATTGGATTTGCCAGAACACCTCTGGAAAACACCCCACGTCGCCACCACAGCCAAAGTGCGAAGC
AGCGCGGCAAAAAACAAGGAAGGACCAAAGAAAATGGCAGGCTGA

Upstream 100 bases:

>100_bases
GATCATGCACCGGATGGCATCACACCCCTTTACGATATCTTAGAGCCTCACGTGGATGATGCCGCTTGGCAGGATTTGCA
CCACATGAGGAAAAACAAAA

Downstream 100 bases:

>100_bases
GGATCAGACGCGGGATGTGCCATTGCCCTTCCCTGAGACGGTGCGCACAAAAAATGCCGCTGCACCGAAGGTCACGATTG
GTAAACCACTGCGCCATTTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MAERISPTSLQHKQEHIEQPQRGAQKADTLVELAKLEPLTDGGLRTSQLLAQTLALAPDHHEARVLRERLHQMFVPRWHF
PMLADKTRNNAYARAINAKVKPGDIVLDIGCGAGLTAMLAARAGAKHVYTCEQQPLIAQAAMQVIRDNGLSDCITVIPKL
SHNLVVGVDIPEPADVVISEIVDTVLLGEGALATLTHAMHMLAKPNARAIPESGKLIAQLVQSDALMNLMRPTEAEEFDL
SAFHRFASVAQLTPNDVAACALTPLGPASDLFGFDFTIPTVRSARTTTNLACGQTGTIHAVFVSFEMELAPDIVLSNGLQ
SDGHWGRTAFLLDHPRPAADGTRLTVTAQHDAAQLSLTIAGDEPALRASENATGWLKRALDLPEHLWKTPHVATTAKVRS
SAAKNKEGPKKMAG

Sequences:

>Translated_414_residues
MAERISPTSLQHKQEHIEQPQRGAQKADTLVELAKLEPLTDGGLRTSQLLAQTLALAPDHHEARVLRERLHQMFVPRWHF
PMLADKTRNNAYARAINAKVKPGDIVLDIGCGAGLTAMLAARAGAKHVYTCEQQPLIAQAAMQVIRDNGLSDCITVIPKL
SHNLVVGVDIPEPADVVISEIVDTVLLGEGALATLTHAMHMLAKPNARAIPESGKLIAQLVQSDALMNLMRPTEAEEFDL
SAFHRFASVAQLTPNDVAACALTPLGPASDLFGFDFTIPTVRSARTTTNLACGQTGTIHAVFVSFEMELAPDIVLSNGLQ
SDGHWGRTAFLLDHPRPAADGTRLTVTAQHDAAQLSLTIAGDEPALRASENATGWLKRALDLPEHLWKTPHVATTAKVRS
SAAKNKEGPKKMAG
>Mature_413_residues
AERISPTSLQHKQEHIEQPQRGAQKADTLVELAKLEPLTDGGLRTSQLLAQTLALAPDHHEARVLRERLHQMFVPRWHFP
MLADKTRNNAYARAINAKVKPGDIVLDIGCGAGLTAMLAARAGAKHVYTCEQQPLIAQAAMQVIRDNGLSDCITVIPKLS
HNLVVGVDIPEPADVVISEIVDTVLLGEGALATLTHAMHMLAKPNARAIPESGKLIAQLVQSDALMNLMRPTEAEEFDLS
AFHRFASVAQLTPNDVAACALTPLGPASDLFGFDFTIPTVRSARTTTNLACGQTGTIHAVFVSFEMELAPDIVLSNGLQS
DGHWGRTAFLLDHPRPAADGTRLTVTAQHDAAQLSLTIAGDEPALRASENATGWLKRALDLPEHLWKTPHVATTAKVRSS
AAKNKEGPKKMAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI9506615, Length=322, Percent_Identity=28.5714285714286, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI40538772, Length=160, Percent_Identity=36.25, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI223556008, Length=285, Percent_Identity=30.8771929824561, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI44771198, Length=285, Percent_Identity=30.8771929824561, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI223556010, Length=285, Percent_Identity=30.8771929824561, Blast_Score=92, Evalue=7e-19,
Organism=Homo sapiens, GI40288288, Length=254, Percent_Identity=30.3149606299213, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI296317343, Length=261, Percent_Identity=25.6704980842912, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI46255049, Length=285, Percent_Identity=27.3684210526316, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI46255047, Length=285, Percent_Identity=27.3684210526316, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI227908867, Length=141, Percent_Identity=36.1702127659575, Blast_Score=83, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17509621, Length=154, Percent_Identity=33.7662337662338, Blast_Score=80, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI115532940, Length=167, Percent_Identity=27.5449101796407, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17566490, Length=294, Percent_Identity=25.1700680272109, Blast_Score=74, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6319508, Length=124, Percent_Identity=37.9032258064516, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI221330572, Length=259, Percent_Identity=30.1158301158301, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI21356361, Length=299, Percent_Identity=26.4214046822742, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24645553, Length=231, Percent_Identity=29.8701298701299, Blast_Score=83, Evalue=3e-16,
Organism=Drosophila melanogaster, GI21357573, Length=273, Percent_Identity=26.3736263736264, Blast_Score=76, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24647025, Length=273, Percent_Identity=26.3736263736264, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24581602, Length=328, Percent_Identity=25.3048780487805, Blast_Score=75, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24583607, Length=135, Percent_Identity=32.5925925925926, Blast_Score=74, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44560; Mature: 44428

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAERISPTSLQHKQEHIEQPQRGAQKADTLVELAKLEPLTDGGLRTSQLLAQTLALAPDH
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCC
HEARVLRERLHQMFVPRWHFPMLADKTRNNAYARAINAKVKPGDIVLDIGCGAGLTAMLA
HHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEHEECCCCCCCCEEEECCCCCCHHHHHH
ARAGAKHVYTCEQQPLIAQAAMQVIRDNGLSDCITVIPKLSHNLVVGVDIPEPADVVISE
HHCCCCCEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
IVDTVLLGEGALATLTHAMHMLAKPNARAIPESGKLIAQLVQSDALMNLMRPTEAEEFDL
HHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCH
SAFHRFASVAQLTPNDVAACALTPLGPASDLFGFDFTIPTVRSARTTTNLACGQTGTIHA
HHHHHHHHHHHCCCCCHHEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCEECCCCCCEEE
VFVSFEMELAPDIVLSNGLQSDGHWGRTAFLLDHPRPAADGTRLTVTAQHDAAQLSLTIA
EEEEEEHHHCCHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEE
GDEPALRASENATGWLKRALDLPEHLWKTPHVATTAKVRSSAAKNKEGPKKMAG
CCCCCCCCCCCHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHCCCCCCHHCCC
>Mature Secondary Structure 
AERISPTSLQHKQEHIEQPQRGAQKADTLVELAKLEPLTDGGLRTSQLLAQTLALAPDH
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCC
HEARVLRERLHQMFVPRWHFPMLADKTRNNAYARAINAKVKPGDIVLDIGCGAGLTAMLA
HHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCEEHEECCCCCCCCEEEECCCCCCHHHHHH
ARAGAKHVYTCEQQPLIAQAAMQVIRDNGLSDCITVIPKLSHNLVVGVDIPEPADVVISE
HHCCCCCEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
IVDTVLLGEGALATLTHAMHMLAKPNARAIPESGKLIAQLVQSDALMNLMRPTEAEEFDL
HHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCH
SAFHRFASVAQLTPNDVAACALTPLGPASDLFGFDFTIPTVRSARTTTNLACGQTGTIHA
HHHHHHHHHHHCCCCCHHEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCEECCCCCCEEE
VFVSFEMELAPDIVLSNGLQSDGHWGRTAFLLDHPRPAADGTRLTVTAQHDAAQLSLTIA
EEEEEEHHHCCHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEE
GDEPALRASENATGWLKRALDLPEHLWKTPHVATTAKVRSSAAKNKEGPKKMAG
CCCCCCCCCCCHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA