| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is hyuA
Identifier: 110680742
GI number: 110680742
Start: 3445641
End: 3447668
Strand: Direct
Name: hyuA
Synonym: RD1_3584
Alternate gene names: NA
Gene position: 3445641-3447668 (Clockwise)
Preceding gene: 110680741
Following gene: 110680743
Centisome position: 83.37
GC content: 58.38
Gene sequence:
>2028_bases ATGAAAAATACCAGAGTAGCTGTGGATGTGGGCGGAACGTTTACCGACGTTTGCATCATGGATGAAACCACAGGTGCGAT CCGCATCGAAAAGACGTCATCCACCCCGGATGATCCAATGGTCGCCATCCTCAACGGGATTGATCAGGGCGGCATCGACC TCAGTGAGGTGTCGATGTTCTCGCATGGTACAACCGTTGCCACCAATGCGCTGATCACACGAAATCTGGCGCGCTCCGCA ATGATTTGCACCGAAGGTTTTCGCGATGTGGTCGAGATACGCCGCGCCAACAAGGAGGACCTTTGGGACACATACAAGGA CGTCGCCAAACCCTACATCCCGCGCCGTGATCGACTGACCGTAAGGGAATGTGTCGATGCGAATGGCACCGTGCTGGAAA AGCTGGACGAGGAAGAAGCACTGCGCATCGCGAACATTCTGAAAAAGCGCAAAGTCGCTTCGGTCGCGGTCTGCTTCATG AACTCCTACACCAACGGCGCGAATGAAGAGCGGATGCGTGACATTCTGCTCAGCGTGATGCCGGATGTGCCTGTTTCCAT CTCTTCGCAGGTATTGCCGGAGATCTTTGAACACGAGCGGTTTTCCACCACGATGGCAAATGCGGTCGTCTCGCCTTCGG TCGTCGATTATGTGGAACGGCTTGAGGGCAAGCTGTCTGACGGAGGATATGAGCGTGACCTGCTGCTGCTGCACACAGGC GGCGGCGTGATGACGCCTGCAAGTGTCAAGGACTTCGCGGCCCGACTTGCCGGGTCAGGCATCGCGGCGGGGGCAATTGC CAGCCGTTTCATTGGCAACCTTTGTGGGTTTGACAACTCCATCGGCTTTGACATGGGCGGTACAAGCACCGACGTCTCGC TGGTCTACGAGGGCAAGTCACGGGTCACGAAAGACTGGTACATCGAATACGGCTACCCGATCCGGTTCCCGTCCATCGAA GTGCTGACCATCGGTGCAGGTGGCGGGTCGCTGGCATGGAAAGACGAAGGCGGTTCGCTGCGCAACGGTCCGCAGTCTGC GGGCGCGTTCCCGGGGCCGGCGTGCTACAAGAACGGCAATGAGGTCGCGACGAACACGGACGCGAATGTTGTTCTGGGCC GCCTTGGCACCTCACTGGCAGGTGGCAAGATTACCCTTGATCCCGCTCTGGCCGAAGCCTCGGTCAGAGAGACCGTGGCA GAGCCGTTCGGCATGGAACTGCACGAAGCCGCAGAAGCCATTGTTGCGGTTGCCAACGCAAATATGGCCAACGCCGTGCG TTTGCTGTCCATCAGCCGGGGCTATGACCCGCGCGACTTCGCACTTGTGGCCTTCGGCGGTGCGGGCGCCTTGCACGGCG CGGCGATCGCCAGGGAACTGTCGATTCCGACTGTCATTATCCCGCCAAATCCGGGCGTGACTTCGGCTTTGGGCTGCTTG CTCGTGGACATCCAGCACGATTTCTCCGACAGCTTCATGGCCGCAGCGGCAGACACCAAGCCAGAGGATGTGGAGGCTGC TTTTGAACGTCTGGAAGCCATGGCCGCAGAGCGACTGAAGCATGAAGGCGTGGCACCCAAGGACATTGTCATGCAGCGCA CCGTCGAGATGATGTATCAGGGTCAGTGGCGTGCTCTGGCAGTTGCCGCCCCTTCCAAGGTCACGGACATCGACTCGCTG ATTGATGCTTTCCACAACGAGCATCAGCGGGAATTCAACTTCCGTCGTGATGATGCGCCGGTGTCGATTTTCCGGGTGGG GCTGACCGCAACGGGCATGGTGCCCAAGGCGGAGCTGCAATCCCACGAGGTCAAGAAAAACACACCAACAACCGACAATA CGCGCGACGTCTGGTTTGACGGCAAGGCCCACACCGCGATGATTTTCGAGCGTGATGATCTGACCGCCGGGGCAACATTC GACGGTCCCGCGATTGTCGAGCAGTTTGACTCAACCACCGTGATTCCGCCGAACACGACTGCTGAAGTCGACAAATACAT GAACATTCTCATCCGAGTTCAGGAGTAA
Upstream 100 bases:
>100_bases TGCTTCACCGTAAACCAACCTTAACAAACGGAAACCTCTCATTGGGTCGGCCTGCGCCGACACCATTGTGATGCCTTGTT GTCTTTTGAAGGATGAAAGA
Downstream 100 bases:
>100_bases AATCATGAGTGATTCAAAAGCCCTAGACCCCGTCACGTTTGAAGTTCTCAAGAACTCATTCATCACCTCGGTCGACCAGA TGGCCGAGCAGATGTTGCGT
Product: hydantoin utilization protein A, putative
Products: ADP; phosphate; N-carbamoylsarcosine
Alternate protein names: NA
Number of amino acids: Translated: 675; Mature: 675
Protein sequence:
>675_residues MKNTRVAVDVGGTFTDVCIMDETTGAIRIEKTSSTPDDPMVAILNGIDQGGIDLSEVSMFSHGTTVATNALITRNLARSA MICTEGFRDVVEIRRANKEDLWDTYKDVAKPYIPRRDRLTVRECVDANGTVLEKLDEEEALRIANILKKRKVASVAVCFM NSYTNGANEERMRDILLSVMPDVPVSISSQVLPEIFEHERFSTTMANAVVSPSVVDYVERLEGKLSDGGYERDLLLLHTG GGVMTPASVKDFAARLAGSGIAAGAIASRFIGNLCGFDNSIGFDMGGTSTDVSLVYEGKSRVTKDWYIEYGYPIRFPSIE VLTIGAGGGSLAWKDEGGSLRNGPQSAGAFPGPACYKNGNEVATNTDANVVLGRLGTSLAGGKITLDPALAEASVRETVA EPFGMELHEAAEAIVAVANANMANAVRLLSISRGYDPRDFALVAFGGAGALHGAAIARELSIPTVIIPPNPGVTSALGCL LVDIQHDFSDSFMAAAADTKPEDVEAAFERLEAMAAERLKHEGVAPKDIVMQRTVEMMYQGQWRALAVAAPSKVTDIDSL IDAFHNEHQREFNFRRDDAPVSIFRVGLTATGMVPKAELQSHEVKKNTPTTDNTRDVWFDGKAHTAMIFERDDLTAGATF DGPAIVEQFDSTTVIPPNTTAEVDKYMNILIRVQE
Sequences:
>Translated_675_residues MKNTRVAVDVGGTFTDVCIMDETTGAIRIEKTSSTPDDPMVAILNGIDQGGIDLSEVSMFSHGTTVATNALITRNLARSA MICTEGFRDVVEIRRANKEDLWDTYKDVAKPYIPRRDRLTVRECVDANGTVLEKLDEEEALRIANILKKRKVASVAVCFM NSYTNGANEERMRDILLSVMPDVPVSISSQVLPEIFEHERFSTTMANAVVSPSVVDYVERLEGKLSDGGYERDLLLLHTG GGVMTPASVKDFAARLAGSGIAAGAIASRFIGNLCGFDNSIGFDMGGTSTDVSLVYEGKSRVTKDWYIEYGYPIRFPSIE VLTIGAGGGSLAWKDEGGSLRNGPQSAGAFPGPACYKNGNEVATNTDANVVLGRLGTSLAGGKITLDPALAEASVRETVA EPFGMELHEAAEAIVAVANANMANAVRLLSISRGYDPRDFALVAFGGAGALHGAAIARELSIPTVIIPPNPGVTSALGCL LVDIQHDFSDSFMAAAADTKPEDVEAAFERLEAMAAERLKHEGVAPKDIVMQRTVEMMYQGQWRALAVAAPSKVTDIDSL IDAFHNEHQREFNFRRDDAPVSIFRVGLTATGMVPKAELQSHEVKKNTPTTDNTRDVWFDGKAHTAMIFERDDLTAGATF DGPAIVEQFDSTTVIPPNTTAEVDKYMNILIRVQE >Mature_675_residues MKNTRVAVDVGGTFTDVCIMDETTGAIRIEKTSSTPDDPMVAILNGIDQGGIDLSEVSMFSHGTTVATNALITRNLARSA MICTEGFRDVVEIRRANKEDLWDTYKDVAKPYIPRRDRLTVRECVDANGTVLEKLDEEEALRIANILKKRKVASVAVCFM NSYTNGANEERMRDILLSVMPDVPVSISSQVLPEIFEHERFSTTMANAVVSPSVVDYVERLEGKLSDGGYERDLLLLHTG GGVMTPASVKDFAARLAGSGIAAGAIASRFIGNLCGFDNSIGFDMGGTSTDVSLVYEGKSRVTKDWYIEYGYPIRFPSIE VLTIGAGGGSLAWKDEGGSLRNGPQSAGAFPGPACYKNGNEVATNTDANVVLGRLGTSLAGGKITLDPALAEASVRETVA EPFGMELHEAAEAIVAVANANMANAVRLLSISRGYDPRDFALVAFGGAGALHGAAIARELSIPTVIIPPNPGVTSALGCL LVDIQHDFSDSFMAAAADTKPEDVEAAFERLEAMAAERLKHEGVAPKDIVMQRTVEMMYQGQWRALAVAAPSKVTDIDSL IDAFHNEHQREFNFRRDDAPVSIFRVGLTATGMVPKAELQSHEVKKNTPTTDNTRDVWFDGKAHTAMIFERDDLTAGATF DGPAIVEQFDSTTVIPPNTTAEVDKYMNILIRVQE
Specific function: Unknown
COG id: COG0145
COG function: function code EQ; N-methylhydantoinase A/acetone carboxylase, beta subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the oxoprolinase family [H]
Homologues:
Organism=Homo sapiens, GI48314820, Length=725, Percent_Identity=30.3448275862069, Blast_Score=220, Evalue=3e-57, Organism=Caenorhabditis elegans, GI133901900, Length=720, Percent_Identity=26.8055555555556, Blast_Score=186, Evalue=3e-47, Organism=Saccharomyces cerevisiae, GI6322634, Length=745, Percent_Identity=29.261744966443, Blast_Score=224, Evalue=3e-59, Organism=Drosophila melanogaster, GI45550492, Length=737, Percent_Identity=28.9009497964722, Blast_Score=207, Evalue=2e-53,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008040 - InterPro: IPR002821 [H]
Pfam domain/function: PF05378 Hydant_A_N; PF01968 Hydantoinase_A [H]
EC number: 3.5.2.14
Molecular weight: Translated: 72757; Mature: 72757
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNTRVAVDVGGTFTDVCIMDETTGAIRIEKTSSTPDDPMVAILNGIDQGGIDLSEVSMF CCCCEEEEEECCCEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCHHHHHHH SHGTTVATNALITRNLARSAMICTEGFRDVVEIRRANKEDLWDTYKDVAKPYIPRRDRLT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCH VRECVDANGTVLEKLDEEEALRIANILKKRKVASVAVCFMNSYTNGANEERMRDILLSVM HHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC PDVPVSISSQVLPEIFEHERFSTTMANAVVSPSVVDYVERLEGKLSDGGYERDLLLLHTG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEEEECC GGVMTPASVKDFAARLAGSGIAAGAIASRFIGNLCGFDNSIGFDMGGTSTDVSLVYEGKS CCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCC RVTKDWYIEYGYPIRFPSIEVLTIGAGGGSLAWKDEGGSLRNGPQSAGAFPGPACYKNGN CCCEEEEEEECCEEECCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCHHHCCCC EVATNTDANVVLGRLGTSLAGGKITLDPALAEASVRETVAEPFGMELHEAAEAIVAVANA CEECCCCCCEEEEHHCCCCCCCEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC NMANAVRLLSISRGYDPRDFALVAFGGAGALHGAAIARELSIPTVIIPPNPGVTSALGCL CHHHHEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHE LVDIQHDFSDSFMAAAADTKPEDVEAAFERLEAMAAERLKHEGVAPKDIVMQRTVEMMYQ EEEECCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC GQWRALAVAAPSKVTDIDSLIDAFHNEHQREFNFRRDDAPVSIFRVGLTATGMVPKAELQ CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCHHHHH SHEVKKNTPTTDNTRDVWFDGKAHTAMIFERDDLTAGATFDGPAIVEQFDSTTVIPPNTT HCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCEEECCCCH AEVDKYMNILIRVQE HHHHHHEEEEEEECC >Mature Secondary Structure MKNTRVAVDVGGTFTDVCIMDETTGAIRIEKTSSTPDDPMVAILNGIDQGGIDLSEVSMF CCCCEEEEEECCCEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHCCCCCCCCHHHHHHH SHGTTVATNALITRNLARSAMICTEGFRDVVEIRRANKEDLWDTYKDVAKPYIPRRDRLT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCH VRECVDANGTVLEKLDEEEALRIANILKKRKVASVAVCFMNSYTNGANEERMRDILLSVM HHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC PDVPVSISSQVLPEIFEHERFSTTMANAVVSPSVVDYVERLEGKLSDGGYERDLLLLHTG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCEEEEECC GGVMTPASVKDFAARLAGSGIAAGAIASRFIGNLCGFDNSIGFDMGGTSTDVSLVYEGKS CCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCC RVTKDWYIEYGYPIRFPSIEVLTIGAGGGSLAWKDEGGSLRNGPQSAGAFPGPACYKNGN CCCEEEEEEECCEEECCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCHHHCCCC EVATNTDANVVLGRLGTSLAGGKITLDPALAEASVRETVAEPFGMELHEAAEAIVAVANA CEECCCCCCEEEEHHCCCCCCCEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC NMANAVRLLSISRGYDPRDFALVAFGGAGALHGAAIARELSIPTVIIPPNPGVTSALGCL CHHHHEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHE LVDIQHDFSDSFMAAAADTKPEDVEAAFERLEAMAAERLKHEGVAPKDIVMQRTVEMMYQ EEEECCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC GQWRALAVAAPSKVTDIDSLIDAFHNEHQREFNFRRDDAPVSIFRVGLTATGMVPKAELQ CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCHHHHH SHEVKKNTPTTDNTRDVWFDGKAHTAMIFERDDLTAGATFDGPAIVEQFDSTTVIPPNTT HCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCEEECCCCH AEVDKYMNILIRVQE HHHHHHEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; N-methylimidazolidine-2,4-dione; H2O
Specific reaction: ATP + N-methylimidazolidine-2,4-dione + 2 H2O = ADP + phosphate + N-carbamoylsarcosine
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]