Click here to switch to the map view.

The map label for this gene is nisX1 [H]

Identifier: 110680623

GI number: 110680623

Start: 3328308

End: 3328784

Strand: Direct

Name: nisX1 [H]

Synonym: RD1_3457

Alternate gene names: 110680623

Gene position: 3328308-3328784 (Clockwise)

Preceding gene: 110680622

Following gene: 110680624

Centisome position: 80.53

GC content: 55.35

Gene sequence:

>477_bases
ATGCTGCGCATGACCCTGCCGGGCAGTGGGTGTGCCGACATCACGTATCTGCCCATGCGGCGGGGCTTTTTGTATCTGGT
CGCGATCATGGACTGGCACACACGCAAGGTGCTGGCTTGGCGCATCTCGAACACGCTGGAGGCTGGCTTCTGCGTTGATG
CTCTGAATGAGGCGATCCACAAGTTTGGCGCACCAGACATAATGAACACCGACCAAGGGTCCCAGTTCACATCGTTTGCT
TGGACCGACAGACTGCGGCGCTCGAACGTGAGTATCTCGATGGATGGAAGAGGCCGTTTTCTCGACAACATCTTCGTTGA
ACGGTTGTGGCGGTCTTTGAAATATGAATGCATCTATCTGCACGCCTGGGAAACCGGATCTGAGGCGAAGGATGGAATCA
GAAAGTGGATCGAGTTCTACAATCACAAGCGCCCGCATTATGCCCTTGGCGGCAAACCACCCGCTCTGGTCTACTGA

Upstream 100 bases:

>100_bases
AGCCCAACACGAGCAGAGCCGCCAAGGGTCACAAGATTTACCCCTATCTGCTGCGTGGGTTGCGGGTAGATCGGCCCAAC
CAAGTCCCCCTCTCGGGATC

Downstream 100 bases:

>100_bases
CAGAGATACGAAACAACCAACCCCGATCAGCAGGTGTAAAGAGTAGCTTAATTTACGACAGATCCTGTCCAACAAATGGG
GAGTAGCTCACGTCCACCTA

Product: transposase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MLRMTLPGSGCADITYLPMRRGFLYLVAIMDWHTRKVLAWRISNTLEAGFCVDALNEAIHKFGAPDIMNTDQGSQFTSFA
WTDRLRRSNVSISMDGRGRFLDNIFVERLWRSLKYECIYLHAWETGSEAKDGIRKWIEFYNHKRPHYALGGKPPALVY

Sequences:

>Translated_158_residues
MLRMTLPGSGCADITYLPMRRGFLYLVAIMDWHTRKVLAWRISNTLEAGFCVDALNEAIHKFGAPDIMNTDQGSQFTSFA
WTDRLRRSNVSISMDGRGRFLDNIFVERLWRSLKYECIYLHAWETGSEAKDGIRKWIEFYNHKRPHYALGGKPPALVY
>Mature_158_residues
MLRMTLPGSGCADITYLPMRRGFLYLVAIMDWHTRKVLAWRISNTLEAGFCVDALNEAIHKFGAPDIMNTDQGSQFTSFA
WTDRLRRSNVSISMDGRGRFLDNIFVERLWRSLKYECIYLHAWETGSEAKDGIRKWIEFYNHKRPHYALGGKPPALVY

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=114, Percent_Identity=31.5789473684211, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1788405, Length=145, Percent_Identity=35.1724137931034, Blast_Score=80, Evalue=4e-17,
Organism=Escherichia coli, GI1787263, Length=145, Percent_Identity=35.1724137931034, Blast_Score=80, Evalue=4e-17,
Organism=Escherichia coli, GI1786753, Length=145, Percent_Identity=35.1724137931034, Blast_Score=80, Evalue=4e-17,
Organism=Escherichia coli, GI1786570, Length=145, Percent_Identity=35.1724137931034, Blast_Score=80, Evalue=4e-17,
Organism=Escherichia coli, GI1786490, Length=145, Percent_Identity=35.1724137931034, Blast_Score=80, Evalue=4e-17,
Organism=Escherichia coli, GI1789981, Length=146, Percent_Identity=28.7671232876712, Blast_Score=76, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 18338; Mature: 18338

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRMTLPGSGCADITYLPMRRGFLYLVAIMDWHTRKVLAWRISNTLEAGFCVDALNEAIH
CEEEECCCCCCCCEEEHHHHCCCEEEHHHHHHCCHHHEEEECCCCCCCCHHHHHHHHHHH
KFGAPDIMNTDQGSQFTSFAWTDRLRRSNVSISMDGRGRFLDNIFVERLWRSLKYECIYL
HCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEE
HAWETGSEAKDGIRKWIEFYNHKRPHYALGGKPPALVY
EEECCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCCCC
>Mature Secondary Structure
MLRMTLPGSGCADITYLPMRRGFLYLVAIMDWHTRKVLAWRISNTLEAGFCVDALNEAIH
CEEEECCCCCCCCEEEHHHHCCCEEEHHHHHHCCHHHEEEECCCCCCCCHHHHHHHHHHH
KFGAPDIMNTDQGSQFTSFAWTDRLRRSNVSISMDGRGRFLDNIFVERLWRSLKYECIYL
HCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEEE
HAWETGSEAKDGIRKWIEFYNHKRPHYALGGKPPALVY
EEECCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1482189; 11337471; 1482192 [H]