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The map label for this gene is 110680615

Identifier: 110680615

GI number: 110680615

Start: 3311712

End: 3312782

Strand: Direct

Name: 110680615

Synonym: RD1_3446

Alternate gene names: NA

Gene position: 3311712-3312782 (Clockwise)

Preceding gene: 110680614

Following gene: 110680621

Centisome position: 80.13

GC content: 55.37

Gene sequence:

>1071_bases
ATGTTCAACTCAGACCGTCTCAAAACAGCCCGCGAAAGACGGATGCTGACTGCGAAGGGACTCGCAGAGCGCGTAGGCGT
GTCAGCGGTAACTCTCTCGAAGTATGAAAATGGGCATGCGCCCGATGAAGCGACCGCAAAGCGCCTTGCCATGGCGCTTT
CCTACCCTCTTGATTTCTTTTTCAGAGAGGCACCAGAACGCATTGATACCGATGCGGTGAGTTTCCGCAGTCTGGCCCGC
ATGAAGGCGAAAGAACGCCGCGCGGCGGAAGCGGCAGGATCGTTGGGAATTGAGCTTTACGAATGGATTGATGCCCGTTT
CAATCTGCCCTCCGCTGACCTGATCGATCTGAGCAAAGAGCGCCGCCGCCCGTTTGTCGCCGCGCGCCTTCTGCGCCAGC
ATTGGGGGCTTGGGGACAGGCCAATTGGCAATGTTCTCAAGCTGATCGAGTCCAAGGGTATTCGCGTCCTGTCTCTATCA
GAGGCGACCAAGAACGTTGATGCATACTCCTTTTGGCGCGGGGAACATCCTTACGTTTTCCTAAACCAAGAGAAGACGGC
GGAACGATCCATCTTCGACACGGCGCATGAGCTTGGACACCTTGTCTTGCATCATCATGCGGACTCGAAGACTGATAAAG
AAGCAGAGACGCAGGCCGACAGGTTCGCATCGGCGTTCCTGATGCCCGAAAGCGACGTAATGGATTATGCGCACCTATTT
ACGGCGGGGCAGATTATCGCGGCAAAGAAACGGTGGAAGGTGTCCGCGATGGCTTTGGCTAACCGGCTCAACTCGCTGGG
CTACATCAGCGAATGGAACTACCGTTCATTGCTGATTGAGCTCGGGAAGCGGGGTTATCGCAGCGGCGAGCCCGACGGGA
TCGAGCGAGAGGTTTCGACCGTGCTAGCTAAGGTGTTGGCCGCTCTTTGGTCCAAGGGTATGACGAAAGAGAACATTGCT
AGAGATCTTGGGATTCCGCTAGAAGAAATAGAAGCTTTGATTTTCCGGCTATCGCCAGATCAAGGCGCCTCACTTGAGGT
TCGCAAGCCTTCCCTGCGAGTGGTCAAATAG

Upstream 100 bases:

>100_bases
GAATCTACATTTACTCGCCGGACAGCGACTGGGAGGCAGCGCCGGACACCGATACCGGTCCTATTGATGACTTCGAAATC
CAATTTTCTTTCAAAGACTA

Downstream 100 bases:

>100_bases
AAATACTGCGATGGCGCAACGTAGCACTAAGGGAAACACACTTCTGCGCATCCACGCCGGCCGCAAGTGTCCAATTCTTC
GCCGCCCGACACAGAAACAA

Product: DNA-binding protein, putative

Products: NA

Alternate protein names: Helix-Turn-Helix Domain Protein; Helix-Turn-Helix Domain-Containing Protein; Zn Peptidase; Transcriptional Regulator HTH_3 Family; Conserved Domain Protein; Transcription Regulator; DNA-Bining Transcriptional Regulator; XRE Family Transcriptional Regulator; Phage-Like Protein; Regulatory Protein

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MFNSDRLKTARERRMLTAKGLAERVGVSAVTLSKYENGHAPDEATAKRLAMALSYPLDFFFREAPERIDTDAVSFRSLAR
MKAKERRAAEAAGSLGIELYEWIDARFNLPSADLIDLSKERRRPFVAARLLRQHWGLGDRPIGNVLKLIESKGIRVLSLS
EATKNVDAYSFWRGEHPYVFLNQEKTAERSIFDTAHELGHLVLHHHADSKTDKEAETQADRFASAFLMPESDVMDYAHLF
TAGQIIAAKKRWKVSAMALANRLNSLGYISEWNYRSLLIELGKRGYRSGEPDGIEREVSTVLAKVLAALWSKGMTKENIA
RDLGIPLEEIEALIFRLSPDQGASLEVRKPSLRVVK

Sequences:

>Translated_356_residues
MFNSDRLKTARERRMLTAKGLAERVGVSAVTLSKYENGHAPDEATAKRLAMALSYPLDFFFREAPERIDTDAVSFRSLAR
MKAKERRAAEAAGSLGIELYEWIDARFNLPSADLIDLSKERRRPFVAARLLRQHWGLGDRPIGNVLKLIESKGIRVLSLS
EATKNVDAYSFWRGEHPYVFLNQEKTAERSIFDTAHELGHLVLHHHADSKTDKEAETQADRFASAFLMPESDVMDYAHLF
TAGQIIAAKKRWKVSAMALANRLNSLGYISEWNYRSLLIELGKRGYRSGEPDGIEREVSTVLAKVLAALWSKGMTKENIA
RDLGIPLEEIEALIFRLSPDQGASLEVRKPSLRVVK
>Mature_356_residues
MFNSDRLKTARERRMLTAKGLAERVGVSAVTLSKYENGHAPDEATAKRLAMALSYPLDFFFREAPERIDTDAVSFRSLAR
MKAKERRAAEAAGSLGIELYEWIDARFNLPSADLIDLSKERRRPFVAARLLRQHWGLGDRPIGNVLKLIESKGIRVLSLS
EATKNVDAYSFWRGEHPYVFLNQEKTAERSIFDTAHELGHLVLHHHADSKTDKEAETQADRFASAFLMPESDVMDYAHLF
TAGQIIAAKKRWKVSAMALANRLNSLGYISEWNYRSLLIELGKRGYRSGEPDGIEREVSTVLAKVLAALWSKGMTKENIA
RDLGIPLEEIEALIFRLSPDQGASLEVRKPSLRVVK

Specific function: Unknown

COG id: COG2856

COG function: function code E; Predicted Zn peptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40140; Mature: 40140

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNSDRLKTARERRMLTAKGLAERVGVSAVTLSKYENGHAPDEATAKRLAMALSYPLDFF
CCCCHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHH
FREAPERIDTDAVSFRSLARMKAKERRAAEAAGSLGIELYEWIDARFNLPSADLIDLSKE
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHCHHH
RRRPFVAARLLRQHWGLGDRPIGNVLKLIESKGIRVLSLSEATKNVDAYSFWRGEHPYVF
HCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEECHHHCCCCHHHEECCCCCEEE
LNQEKTAERSIFDTAHELGHLVLHHHADSKTDKEAETQADRFASAFLMPESDVMDYAHLF
ECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
TAGQIIAAKKRWKVSAMALANRLNSLGYISEWNYRSLLIELGKRGYRSGEPDGIEREVST
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH
VLAKVLAALWSKGMTKENIARDLGIPLEEIEALIFRLSPDQGASLEVRKPSLRVVK
HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHEECCCCCCEEEEECCCCEECC
>Mature Secondary Structure
MFNSDRLKTARERRMLTAKGLAERVGVSAVTLSKYENGHAPDEATAKRLAMALSYPLDFF
CCCCHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHH
FREAPERIDTDAVSFRSLARMKAKERRAAEAAGSLGIELYEWIDARFNLPSADLIDLSKE
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHCHHH
RRRPFVAARLLRQHWGLGDRPIGNVLKLIESKGIRVLSLSEATKNVDAYSFWRGEHPYVF
HCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEEEECHHHCCCCHHHEECCCCCEEE
LNQEKTAERSIFDTAHELGHLVLHHHADSKTDKEAETQADRFASAFLMPESDVMDYAHLF
ECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
TAGQIIAAKKRWKVSAMALANRLNSLGYISEWNYRSLLIELGKRGYRSGEPDGIEREVST
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH
VLAKVLAALWSKGMTKENIARDLGIPLEEIEALIFRLSPDQGASLEVRKPSLRVVK
HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHEECCCCCCEEEEECCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA