| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is phbB [H]
Identifier: 110680566
GI number: 110680566
Start: 3262374
End: 3263096
Strand: Direct
Name: phbB [H]
Synonym: RD1_3395
Alternate gene names: 110680566
Gene position: 3262374-3263096 (Clockwise)
Preceding gene: 110680565
Following gene: 110680568
Centisome position: 78.93
GC content: 57.54
Gene sequence:
>723_bases ATGTCCCGTGTTGCACTTGTCACCGGAGGAAGCCGAGGAATCGGTTCCGCAATTTCAAACGCATTGAAAGATGCAGGATA CGCCGTCGCAGCAACCTATGCCGGCAATGACGAAGCCGCCGCGAAATTTACCGCCGAAACCGGCATCAAAACCTATAAAT GGAACGTCGGCAGCTACGAAGAGAGCAAAAATGGCATCGCGCAGGTCGAGGCCGACCTCGGCCCGATTGACGTGGTTGTG GCCAATGCGGGCATCACGCGGGATGCGCCCTTCCACAAGATGACGCCCGAGCAGTGGCAGGAAGTCATCGACACGAACCT CACCGGGGTTTTCAATACCGTACATCCGGTATGGCCCGGCATGCGCGAGCGCAAGTTTGGCCGTGTGATCGTGATCAGTT CGATCAACGGTCAAAAGGGTCAGTTTGCGCAGGTTAACTATGCAGCCACCAAAGCGGGTGATCTGGGCATCGTCAAGTCA CTGGCACAGGAAGGCGCACGCGCAGGCATCACCGCCAATGCGATCTGCCCCGGCTATATCGCCACGGAAATGGTCATGGC GATCCCTGAAAAAGTACGCGACAGCATCATCGCGGGCATTCCGGCCGGCCGGTTGGGCGAACCCGAAGAGATCGCACGTT GTGTGGCCTTCCTTGCATCAGATGATGCGGGCTTCATCAACGGGTCGACTATTTCCGCGAATGGCGCTCAGTTCTTCGTC TGA
Upstream 100 bases:
>100_bases GCGGCGCCCTGGGGCGCCGCATGATACACCACCGTGCTGGGCTTCAGGCTCAGCACGCCCAACCTGAACAAAGATTCCAG ATCACTTGAGGAGACTGAAT
Downstream 100 bases:
>100_bases ACAATAACATCTTGGAAGTTCAAAGGGCCGGTTCATGCGAACCGGCCCTTTTTGATCCCGTAAGAACGCTGCAGCCGTTC AGCGGGAAACCTTGGAGGGG
Product: acetoacetyl-CoA reductase, putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 240; Mature: 239
Protein sequence:
>240_residues MSRVALVTGGSRGIGSAISNALKDAGYAVAATYAGNDEAAAKFTAETGIKTYKWNVGSYEESKNGIAQVEADLGPIDVVV ANAGITRDAPFHKMTPEQWQEVIDTNLTGVFNTVHPVWPGMRERKFGRVIVISSINGQKGQFAQVNYAATKAGDLGIVKS LAQEGARAGITANAICPGYIATEMVMAIPEKVRDSIIAGIPAGRLGEPEEIARCVAFLASDDAGFINGSTISANGAQFFV
Sequences:
>Translated_240_residues MSRVALVTGGSRGIGSAISNALKDAGYAVAATYAGNDEAAAKFTAETGIKTYKWNVGSYEESKNGIAQVEADLGPIDVVV ANAGITRDAPFHKMTPEQWQEVIDTNLTGVFNTVHPVWPGMRERKFGRVIVISSINGQKGQFAQVNYAATKAGDLGIVKS LAQEGARAGITANAICPGYIATEMVMAIPEKVRDSIIAGIPAGRLGEPEEIARCVAFLASDDAGFINGSTISANGAQFFV >Mature_239_residues SRVALVTGGSRGIGSAISNALKDAGYAVAATYAGNDEAAAKFTAETGIKTYKWNVGSYEESKNGIAQVEADLGPIDVVVA NAGITRDAPFHKMTPEQWQEVIDTNLTGVFNTVHPVWPGMRERKFGRVIVISSINGQKGQFAQVNYAATKAGDLGIVKSL AQEGARAGITANAICPGYIATEMVMAIPEKVRDSIIAGIPAGRLGEPEEIARCVAFLASDDAGFINGSTISANGAQFFV
Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI15277342, Length=257, Percent_Identity=39.2996108949416, Blast_Score=150, Evalue=1e-36, Organism=Homo sapiens, GI40254992, Length=237, Percent_Identity=31.6455696202532, Blast_Score=114, Evalue=8e-26, Organism=Homo sapiens, GI4504505, Length=231, Percent_Identity=34.6320346320346, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI32483357, Length=244, Percent_Identity=31.1475409836066, Blast_Score=98, Evalue=6e-21, Organism=Homo sapiens, GI19923817, Length=248, Percent_Identity=30.241935483871, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI4758504, Length=248, Percent_Identity=29.8387096774194, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI5031737, Length=241, Percent_Identity=30.7053941908714, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI7705925, Length=237, Percent_Identity=28.2700421940928, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI66933014, Length=207, Percent_Identity=26.5700483091787, Blast_Score=81, Evalue=9e-16, Organism=Homo sapiens, GI83715985, Length=248, Percent_Identity=28.2258064516129, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI4503301, Length=204, Percent_Identity=29.4117647058824, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI109715829, Length=233, Percent_Identity=26.1802575107296, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI7657478, Length=190, Percent_Identity=31.0526315789474, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI59889578, Length=193, Percent_Identity=30.5699481865285, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI10190704, Length=241, Percent_Identity=26.5560165975104, Blast_Score=71, Evalue=7e-13, Organism=Homo sapiens, GI126723750, Length=247, Percent_Identity=26.7206477732794, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI33667109, Length=187, Percent_Identity=30.4812834224599, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI31542939, Length=259, Percent_Identity=27.4131274131274, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI4503817, Length=171, Percent_Identity=26.9005847953216, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI1787335, Length=240, Percent_Identity=42.5, Blast_Score=186, Evalue=1e-48, Organism=Escherichia coli, GI1790717, Length=236, Percent_Identity=33.8983050847458, Blast_Score=124, Evalue=4e-30, Organism=Escherichia coli, GI87082100, Length=165, Percent_Identity=40, Blast_Score=118, Evalue=4e-28, Organism=Escherichia coli, GI1788459, Length=241, Percent_Identity=28.6307053941909, Blast_Score=97, Evalue=9e-22, Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=31.8367346938775, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI87082160, Length=239, Percent_Identity=28.8702928870293, Blast_Score=94, Evalue=6e-21, Organism=Escherichia coli, GI2367365, Length=237, Percent_Identity=31.2236286919831, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI1789208, Length=240, Percent_Identity=28.3333333333333, Blast_Score=91, Evalue=5e-20, Organism=Escherichia coli, GI1786812, Length=240, Percent_Identity=27.9166666666667, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI1789057, Length=257, Percent_Identity=26.4591439688716, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1789378, Length=251, Percent_Identity=27.4900398406374, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1787905, Length=239, Percent_Identity=25.5230125523013, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1787820, Length=152, Percent_Identity=32.8947368421053, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787526, Length=243, Percent_Identity=26.3374485596708, Blast_Score=61, Evalue=8e-11, Organism=Caenorhabditis elegans, GI25147288, Length=248, Percent_Identity=40.7258064516129, Blast_Score=154, Evalue=3e-38, Organism=Caenorhabditis elegans, GI17555706, Length=240, Percent_Identity=37.9166666666667, Blast_Score=140, Evalue=4e-34, Organism=Caenorhabditis elegans, GI17568967, Length=231, Percent_Identity=32.034632034632, Blast_Score=114, Evalue=6e-26, Organism=Caenorhabditis elegans, GI17560676, Length=241, Percent_Identity=32.3651452282158, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI17538182, Length=246, Percent_Identity=32.9268292682927, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17561402, Length=240, Percent_Identity=27.9166666666667, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17561272, Length=176, Percent_Identity=33.5227272727273, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17536025, Length=253, Percent_Identity=29.6442687747036, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI193203115, Length=221, Percent_Identity=26.6968325791855, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI193203117, Length=221, Percent_Identity=26.6968325791855, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71994600, Length=253, Percent_Identity=28.0632411067194, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71994604, Length=252, Percent_Identity=27.3809523809524, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17536651, Length=251, Percent_Identity=28.6852589641434, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17562910, Length=260, Percent_Identity=28.0769230769231, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI115534694, Length=236, Percent_Identity=27.5423728813559, Blast_Score=70, Evalue=8e-13, Organism=Caenorhabditis elegans, GI17564282, Length=196, Percent_Identity=25, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI72000259, Length=257, Percent_Identity=29.1828793774319, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17567345, Length=191, Percent_Identity=23.5602094240838, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17508651, Length=239, Percent_Identity=25.9414225941423, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17538486, Length=263, Percent_Identity=27.3764258555133, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=26.8199233716475, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17560150, Length=258, Percent_Identity=27.1317829457364, Blast_Score=64, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=248, Percent_Identity=31.0483870967742, Blast_Score=104, Evalue=1e-23, Organism=Saccharomyces cerevisiae, GI6324126, Length=250, Percent_Identity=28, Blast_Score=82, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6320089, Length=194, Percent_Identity=27.319587628866, Blast_Score=71, Evalue=1e-13, Organism=Drosophila melanogaster, GI24639444, Length=239, Percent_Identity=35.9832635983264, Blast_Score=131, Evalue=3e-31, Organism=Drosophila melanogaster, GI21355319, Length=241, Percent_Identity=29.8755186721992, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI18859837, Length=241, Percent_Identity=30.7053941908714, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI23397609, Length=244, Percent_Identity=30.7377049180328, Blast_Score=91, Evalue=7e-19, Organism=Drosophila melanogaster, GI24643142, Length=238, Percent_Identity=28.9915966386555, Blast_Score=89, Evalue=4e-18, Organism=Drosophila melanogaster, GI21357041, Length=252, Percent_Identity=28.968253968254, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI24641232, Length=233, Percent_Identity=33.0472103004292, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI17737361, Length=256, Percent_Identity=30.078125, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=27.8225806451613, Blast_Score=81, Evalue=5e-16, Organism=Drosophila melanogaster, GI28571526, Length=248, Percent_Identity=26.6129032258064, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24649181, Length=187, Percent_Identity=28.8770053475936, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24581726, Length=159, Percent_Identity=28.9308176100629, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI116007236, Length=198, Percent_Identity=28.2828282828283, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI221331218, Length=197, Percent_Identity=31.4720812182741, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI24665243, Length=197, Percent_Identity=31.4720812182741, Blast_Score=68, Evalue=7e-12, Organism=Drosophila melanogaster, GI221331216, Length=198, Percent_Identity=30.8080808080808, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24665247, Length=198, Percent_Identity=30.8080808080808, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI281364494, Length=257, Percent_Identity=29.9610894941634, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24641388, Length=237, Percent_Identity=25.3164556962025, Blast_Score=64, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011283 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.36 [H]
Molecular weight: Translated: 25127; Mature: 24995
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRVALVTGGSRGIGSAISNALKDAGYAVAATYAGNDEAAAKFTAETGIKTYKWNVGSYE CCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHEEHHHCCCEEEEECCCCCH ESKNGIAQVEADLGPIDVVVANAGITRDAPFHKMTPEQWQEVIDTNLTGVFNTVHPVWPG HCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHCHHHCCCC MRERKFGRVIVISSINGQKGQFAQVNYAATKAGDLGIVKSLAQEGARAGITANAICPGYI HHHCCCCCEEEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHCCHHCCCEECCCCCHHH ATEMVMAIPEKVRDSIIAGIPAGRLGEPEEIARCVAFLASDDAGFINGSTISANGAQFFV HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCEEECCCCEECC >Mature Secondary Structure SRVALVTGGSRGIGSAISNALKDAGYAVAATYAGNDEAAAKFTAETGIKTYKWNVGSYE CEEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHEEHHHCCCEEEEECCCCCH ESKNGIAQVEADLGPIDVVVANAGITRDAPFHKMTPEQWQEVIDTNLTGVFNTVHPVWPG HCCCCCEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHCHHHCCCC MRERKFGRVIVISSINGQKGQFAQVNYAATKAGDLGIVKSLAQEGARAGITANAICPGYI HHHCCCCCEEEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHCCHHCCCEECCCCCHHH ATEMVMAIPEKVRDSIIAGIPAGRLGEPEEIARCVAFLASDDAGFINGSTISANGAQFFV HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCEEECCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2546004; 3286259 [H]