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The map label for this gene is lysM [H]

Identifier: 110680431

GI number: 110680431

Start: 3118658

End: 3119860

Strand: Direct

Name: lysM [H]

Synonym: RD1_3251

Alternate gene names: 110680431

Gene position: 3118658-3119860 (Clockwise)

Preceding gene: 110680430

Following gene: 110680436

Centisome position: 75.46

GC content: 62.26

Gene sequence:

>1203_bases
ATGGTCAGACATTTTTCCCGCACGCGGGTTCGCCTATTGTTTTTGAGTGCAAGCACCGTGGCGCTGCTGGGCGCATGCAC
GCAAGGTTTCGATTACGATTTGCGCGGCATTGGCGGCGGGTTTTCCACAGCGGATGCCGCAAGTCGGGTCGGCACGGAAC
CGCGCCCGCAACCGGATGACCGGGGGGTGATCTCATACCCCAACTATCAAGTTGCCGTGGCCGAACAGGGCGATACGATC
CAAAGCGTCGCGACGCGTTTGGGCGTGGACGCACCTGCCCTCGCCAGCTTCAATGGCATTGATGAGACCGCGCCCCTGCG
CAGTGGTGAAATCATCGCCCTGCCAAACCGCGTGGCCGAACCCAGCCCTTTGACAGGCGCCCAAAGCGATGGCCCCATCC
GGCCCGGAAGCGTTGATATTGGCGCGTTGGCCGGGAACGCCATTGACCGTGCGCCCGAAACCAACAGCGGTGACGTGCGT
GTCGCAGCCCTGCCCCCCGCCTCGGGCACGGCGGAACCTGCAAGCACCGGAAAGGAACCCGTGCGCCACAAGGTTGAACG
TGGTGAAACCGCCTATACCATTTCGCGCCTCTATCAGGTTCCGGTAAAATCACTGGCCGAGTGGAATGGCCTCGGGTCGG
ATTTTGCCATCCGCGAAGGACAGTTCTTGCTGATCCCTGTGGCGATGCAAGCCCCGCCTGCCGCGCAAACCGAAGACGCC
ACGCCCCTGCCGGGCACCGGCTCTCCCACGCCGACACCTCCGAGCGCAACCAGACCGCTGCCCCCGCCCGAACCGCTCTT
GTCCGAGACGCCCGCGCCAATCGACGTTGGCGAACGCACGGCCGCCTCTGATGTGGCGCGCATGTTGTTTCCGGTGAACG
GGTCGATCATTCGCGAGTATTCCAAGGGCCGAAATGAGGGAATCAACATAAAAGCCGCGCCCGGTACTGATGTGAAATCA
GCGGATGTCGGCACCGTGGCCGCTGTCACCAAAAGCGCCGAGGGCGTGCCGATCATCGTGATCCGACACGAGCCTGAACT
GCTGACGGTTTATGCCAATGTGACGGATGTGAGTGTCGAAAAGGGCACGAGGGTTGCGCGTGGCCAAAGCATCGCCAAGC
TGCGCGATGGCGACGATGCCTTTGTGCATTTTGAAGTGCGCCGCGGGTTTGACAGCGTGGACCCAATGCCGTTTCTGCAA
TAG

Upstream 100 bases:

>100_bases
CTGGAAGGCTTGGGAAAGGACGGATAAGCTGTTATAGTGTTAACGAATAAGCGGCCGGAAAACCGGCTCACGCTCAAAGA
GCTACGTTGAGGACATGCAG

Downstream 100 bases:

>100_bases
CGCTCCGTCGGCGGGGCGCAGCACGAGCGACTTTGCAAAATCGGTGTGTCGACTTTGCAAACCACAGCATGTCGTCGCTA
TGGGTTGAGCTTGATGCCTT

Product: LysM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MVRHFSRTRVRLLFLSASTVALLGACTQGFDYDLRGIGGGFSTADAASRVGTEPRPQPDDRGVISYPNYQVAVAEQGDTI
QSVATRLGVDAPALASFNGIDETAPLRSGEIIALPNRVAEPSPLTGAQSDGPIRPGSVDIGALAGNAIDRAPETNSGDVR
VAALPPASGTAEPASTGKEPVRHKVERGETAYTISRLYQVPVKSLAEWNGLGSDFAIREGQFLLIPVAMQAPPAAQTEDA
TPLPGTGSPTPTPPSATRPLPPPEPLLSETPAPIDVGERTAASDVARMLFPVNGSIIREYSKGRNEGINIKAAPGTDVKS
ADVGTVAAVTKSAEGVPIIVIRHEPELLTVYANVTDVSVEKGTRVARGQSIAKLRDGDDAFVHFEVRRGFDSVDPMPFLQ

Sequences:

>Translated_400_residues
MVRHFSRTRVRLLFLSASTVALLGACTQGFDYDLRGIGGGFSTADAASRVGTEPRPQPDDRGVISYPNYQVAVAEQGDTI
QSVATRLGVDAPALASFNGIDETAPLRSGEIIALPNRVAEPSPLTGAQSDGPIRPGSVDIGALAGNAIDRAPETNSGDVR
VAALPPASGTAEPASTGKEPVRHKVERGETAYTISRLYQVPVKSLAEWNGLGSDFAIREGQFLLIPVAMQAPPAAQTEDA
TPLPGTGSPTPTPPSATRPLPPPEPLLSETPAPIDVGERTAASDVARMLFPVNGSIIREYSKGRNEGINIKAAPGTDVKS
ADVGTVAAVTKSAEGVPIIVIRHEPELLTVYANVTDVSVEKGTRVARGQSIAKLRDGDDAFVHFEVRRGFDSVDPMPFLQ
>Mature_400_residues
MVRHFSRTRVRLLFLSASTVALLGACTQGFDYDLRGIGGGFSTADAASRVGTEPRPQPDDRGVISYPNYQVAVAEQGDTI
QSVATRLGVDAPALASFNGIDETAPLRSGEIIALPNRVAEPSPLTGAQSDGPIRPGSVDIGALAGNAIDRAPETNSGDVR
VAALPPASGTAEPASTGKEPVRHKVERGETAYTISRLYQVPVKSLAEWNGLGSDFAIREGQFLLIPVAMQAPPAAQTEDA
TPLPGTGSPTPTPPSATRPLPPPEPLLSETPAPIDVGERTAASDVARMLFPVNGSIIREYSKGRNEGINIKAAPGTDVKS
ADVGTVAAVTKSAEGVPIIVIRHEPELLTVYANVTDVSVEKGTRVARGQSIAKLRDGDDAFVHFEVRRGFDSVDPMPFLQ

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082174, Length=223, Percent_Identity=32.2869955156951, Blast_Score=89, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 41951; Mature: 41951

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRHFSRTRVRLLFLSASTVALLGACTQGFDYDLRGIGGGFSTADAASRVGTEPRPQPDD
CCCCCCCCEEEEEEECCHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHCCCCCCCCCCC
RGVISYPNYQVAVAEQGDTIQSVATRLGVDAPALASFNGIDETAPLRSGEIIALPNRVAE
CCEEECCCEEEEEECCCCHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCEEECCCCCCC
PSPLTGAQSDGPIRPGSVDIGALAGNAIDRAPETNSGDVRVAALPPASGTAEPASTGKEP
CCCCCCCCCCCCCCCCCEEEHHHCCCHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCHHH
VRHKVERGETAYTISRLYQVPVKSLAEWNGLGSDFAIREGQFLLIPVAMQAPPAAQTEDA
HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEEEECCCCCCCCCCC
TPLPGTGSPTPTPPSATRPLPPPEPLLSETPAPIDVGERTAASDVARMLFPVNGSIIREY
CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH
SKGRNEGINIKAAPGTDVKSADVGTVAAVTKSAEGVPIIVIRHEPELLTVYANVTDVSVE
HCCCCCCEEEEECCCCCCCCCCCCCHHHHHHCCCCCEEEEEECCCCEEEEEECCEEEEHH
KGTRVARGQSIAKLRDGDDAFVHFEVRRGFDSVDPMPFLQ
CCCCHHCCCCHHEECCCCCEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MVRHFSRTRVRLLFLSASTVALLGACTQGFDYDLRGIGGGFSTADAASRVGTEPRPQPDD
CCCCCCCCEEEEEEECCHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHCCCCCCCCCCC
RGVISYPNYQVAVAEQGDTIQSVATRLGVDAPALASFNGIDETAPLRSGEIIALPNRVAE
CCEEECCCEEEEEECCCCHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCEEECCCCCCC
PSPLTGAQSDGPIRPGSVDIGALAGNAIDRAPETNSGDVRVAALPPASGTAEPASTGKEP
CCCCCCCCCCCCCCCCCEEEHHHCCCHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCHHH
VRHKVERGETAYTISRLYQVPVKSLAEWNGLGSDFAIREGQFLLIPVAMQAPPAAQTEDA
HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEEEEECCCCCCCCCCC
TPLPGTGSPTPTPPSATRPLPPPEPLLSETPAPIDVGERTAASDVARMLFPVNGSIIREY
CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHH
SKGRNEGINIKAAPGTDVKSADVGTVAAVTKSAEGVPIIVIRHEPELLTVYANVTDVSVE
HCCCCCCEEEEECCCCCCCCCCCCCHHHHHHCCCCCEEEEEECCCCEEEEEECCEEEEHH
KGTRVARGQSIAKLRDGDDAFVHFEVRRGFDSVDPMPFLQ
CCCCHHCCCCHHEECCCCCEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]