| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
Click here to switch to the map view.
The map label for this gene is 110680330
Identifier: 110680330
GI number: 110680330
Start: 3018633
End: 3019148
Strand: Direct
Name: 110680330
Synonym: RD1_3143
Alternate gene names: NA
Gene position: 3018633-3019148 (Clockwise)
Preceding gene: 110680329
Following gene: 110680333
Centisome position: 73.04
GC content: 58.91
Gene sequence:
>516_bases ATGAGCCCGGTGATCACGATCAGGCCCGCGCGAACGTCCGATGAACTTGACGATGTTCGGCGGCTCTGCTGGGAGTATCG CGACTATCTGCTGGGTTTTGACGCCAGCATGAAGAACATCGTCGATGTCTTCTATCCCGTGGACGCTTATACCGCGCTCA TGCAGGACCTGGCAGGGAAACATGCGCGCCCGCGTGGCGAAATTCTGCTTGCCAAGCGTGACGAGCATTCCGTCGGCTGT GCCATGATGCACGCGCTGAATGATCAGGACGTCGAAATCAAGCGCGTGTTCGTCCAGGCGCAGGCGCGTGGCACTGGCGC GGGCGCACAACTGTCGCAAGCCTTGATCGAACAGGCGCGCAGCGACGGTGCAAAACGCATCTTGCTCGACACCAATGCCA GTTTCACAGGGGCACGGCGTCTTTATGAAAAGCTGGGGTTTACGCAGCGCGGCCCCTACAGTGAAATCCCCGAGGTAGCC CTGCCCATGCTGGTGTTTTACGAACTCAAGCTGTAA
Upstream 100 bases:
>100_bases CGCTTGCCCGCTCTGACAGGCTGGCAAAATACAACCAGTTGATCCGGATCGAGGAAGCCTTGGGCGAAACAGCGGAATAT GCCGGTCGTTCAATCTTGCG
Downstream 100 bases:
>100_bases AGCGCTGCGGCCTGTAGGGTGCAATCAGCGAGGCTTCTTCATTGCTGAGCGCCTGCGCCAAGACCTCTTTCGCCGCGATT TCAGACACCAGAGGCGCAAG
Product: acetyltransferase, putative
Products: NA
Alternate protein names: Acetyltransferase; Gcn5-Related N-Acetyltransferase
Number of amino acids: Translated: 171; Mature: 170
Protein sequence:
>171_residues MSPVITIRPARTSDELDDVRRLCWEYRDYLLGFDASMKNIVDVFYPVDAYTALMQDLAGKHARPRGEILLAKRDEHSVGC AMMHALNDQDVEIKRVFVQAQARGTGAGAQLSQALIEQARSDGAKRILLDTNASFTGARRLYEKLGFTQRGPYSEIPEVA LPMLVFYELKL
Sequences:
>Translated_171_residues MSPVITIRPARTSDELDDVRRLCWEYRDYLLGFDASMKNIVDVFYPVDAYTALMQDLAGKHARPRGEILLAKRDEHSVGC AMMHALNDQDVEIKRVFVQAQARGTGAGAQLSQALIEQARSDGAKRILLDTNASFTGARRLYEKLGFTQRGPYSEIPEVA LPMLVFYELKL >Mature_170_residues SPVITIRPARTSDELDDVRRLCWEYRDYLLGFDASMKNIVDVFYPVDAYTALMQDLAGKHARPRGEILLAKRDEHSVGCA MMHALNDQDVEIKRVFVQAQARGTGAGAQLSQALIEQARSDGAKRILLDTNASFTGARRLYEKLGFTQRGPYSEIPEVAL PMLVFYELKL
Specific function: Unknown
COG id: COG0454
COG function: function code KR; Histone acetyltransferase HPA2 and related acetyltransferases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19237; Mature: 19106
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPVITIRPARTSDELDDVRRLCWEYRDYLLGFDASMKNIVDVFYPVDAYTALMQDLAGK CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCC HARPRGEILLAKRDEHSVGCAMMHALNDQDVEIKRVFVQAQARGTGAGAQLSQALIEQAR CCCCCCCEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH SDGAKRILLDTNASFTGARRLYEKLGFTQRGPYSEIPEVALPMLVFYELKL CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure SPVITIRPARTSDELDDVRRLCWEYRDYLLGFDASMKNIVDVFYPVDAYTALMQDLAGK CCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHCC HARPRGEILLAKRDEHSVGCAMMHALNDQDVEIKRVFVQAQARGTGAGAQLSQALIEQAR CCCCCCCEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH SDGAKRILLDTNASFTGARRLYEKLGFTQRGPYSEIPEVALPMLVFYELKL CCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA