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The map label for this gene is 110680225

Identifier: 110680225

GI number: 110680225

Start: 2902672

End: 2903850

Strand: Reverse

Name: 110680225

Synonym: RD1_3033

Alternate gene names: NA

Gene position: 2903850-2902672 (Counterclockwise)

Preceding gene: 110680226

Following gene: 110680224

Centisome position: 70.26

GC content: 60.9

Gene sequence:

>1179_bases
ATGGGTTTTAATTTTCTACGGCGCGGGGCGCAGGCTGAAGTGCCTGAGAAGAAGGCCAGCGCGACCGGCCCTGTTGTGGC
CTATCAGACGACGGGCCGGGTTGCGTGGAGCCCGCGTGATGCTGTTTCACTGACGCGCACGGGTTTTTCAAGCAACCCTG
TTGGGTTTCGCTCTGTGAAACTCATTGCCGAGGCTGCCGCTGCATTGCCGCTTGTGCTGCAAGACGCAGAACAGCGTTTT
GAAGCGCATCCGCTGGTCGATCTGGTGGCGCGCCCGAACCCGATGCAAGGGCGGGCCGAGCTGCTTGAGGCGCTTTATGC
GCAACTGCTGTTGACCGGCAATGCCTATGTGGAAGCGGTATCTGATCTCGATGGCGCGCCGGAGGAGTTACATGTCTTGC
GCTCGGATCGCATGAGTGTCGTGCCTGGCCCGGATGGGTGGCCTGTCGCCTATGAATATGCCGTGGGCGGTCGCAAACAC
CGCTTTGATGCAAGTGGCCCCGTGGTGCCGGTGTGTCATATCAAGAGCTTTCACCCGCAGGATGATCATTACGGTTTTAG
CCCGATGCAGGCGGCGGCCATGGCGGTCGATGTCCATAACTCGGCAAGCCGTTGGTCCAAGGCCCTGCTGGATAATGCGG
CGCGCCCGTCCGGTGCGATCGTCTATCGCGGAGCCGAGGGGCAGGGGTCGATGAACAGTGATCAGTATGACCGCCTTGTG
AGTGAAATGGAGAGCCATCATCAGGGTGCGCGCAATGCCGGGCGACCCATGTTGCTGGAGGGTGGTCTGGATTGGAAGCC
GATGGGGTTTTCCCCGTCCGACATGGAGTTTCAGAAAACCAAGGAATCCGCGGCGCGTGAGATTGCACTGGCCTTCGGGG
TGCCGCCCATGTTGCTGGGTATTCAGGGCGATGCCACATATTCGAATTATCAGGAGGCGCACCGTGCGTTCTATCGTTTG
ACGGTTTTGCCGCTTGCGACACGGGTGACGGCAGCGCTGGCCCATTGGTTGGCGCGCCACACGGGCGAAGCCGTCGAGAT
CAAACCCGATCTTGATCAGGTGCCTGCGCTGGCGGCGGAGCGGGATGCGCAATGGAGCCGGGTTGCGGGGGCGGATTTCC
TGACACAGGCAGAAAAGCGCGCTTTGCTTGGCTTGCCGGCGGTCAGTGCAGATGAGTGA

Upstream 100 bases:

>100_bases
ACAGCATTTTAAACGATATTGATCCCAACAAATCCGAACAGATTTGAAACCGGATTGAGCGGTCAGATGATGCTGCGCGC
ACAGATGAGGAGTGAACAAA

Downstream 100 bases:

>100_bases
TCCTGCGTTTGAGCGCTTTGAATGTGCGCCCGGGCTGCGATTGCAGGCCCATGAGCGCGTTGCACAGATCCAGCATGATA
ACCTCATCCGGCGCCTGGAT

Product: phage portal protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MGFNFLRRGAQAEVPEKKASATGPVVAYQTTGRVAWSPRDAVSLTRTGFSSNPVGFRSVKLIAEAAAALPLVLQDAEQRF
EAHPLVDLVARPNPMQGRAELLEALYAQLLLTGNAYVEAVSDLDGAPEELHVLRSDRMSVVPGPDGWPVAYEYAVGGRKH
RFDASGPVVPVCHIKSFHPQDDHYGFSPMQAAAMAVDVHNSASRWSKALLDNAARPSGAIVYRGAEGQGSMNSDQYDRLV
SEMESHHQGARNAGRPMLLEGGLDWKPMGFSPSDMEFQKTKESAAREIALAFGVPPMLLGIQGDATYSNYQEAHRAFYRL
TVLPLATRVTAALAHWLARHTGEAVEIKPDLDQVPALAAERDAQWSRVAGADFLTQAEKRALLGLPAVSADE

Sequences:

>Translated_392_residues
MGFNFLRRGAQAEVPEKKASATGPVVAYQTTGRVAWSPRDAVSLTRTGFSSNPVGFRSVKLIAEAAAALPLVLQDAEQRF
EAHPLVDLVARPNPMQGRAELLEALYAQLLLTGNAYVEAVSDLDGAPEELHVLRSDRMSVVPGPDGWPVAYEYAVGGRKH
RFDASGPVVPVCHIKSFHPQDDHYGFSPMQAAAMAVDVHNSASRWSKALLDNAARPSGAIVYRGAEGQGSMNSDQYDRLV
SEMESHHQGARNAGRPMLLEGGLDWKPMGFSPSDMEFQKTKESAAREIALAFGVPPMLLGIQGDATYSNYQEAHRAFYRL
TVLPLATRVTAALAHWLARHTGEAVEIKPDLDQVPALAAERDAQWSRVAGADFLTQAEKRALLGLPAVSADE
>Mature_391_residues
GFNFLRRGAQAEVPEKKASATGPVVAYQTTGRVAWSPRDAVSLTRTGFSSNPVGFRSVKLIAEAAAALPLVLQDAEQRFE
AHPLVDLVARPNPMQGRAELLEALYAQLLLTGNAYVEAVSDLDGAPEELHVLRSDRMSVVPGPDGWPVAYEYAVGGRKHR
FDASGPVVPVCHIKSFHPQDDHYGFSPMQAAAMAVDVHNSASRWSKALLDNAARPSGAIVYRGAEGQGSMNSDQYDRLVS
EMESHHQGARNAGRPMLLEGGLDWKPMGFSPSDMEFQKTKESAAREIALAFGVPPMLLGIQGDATYSNYQEAHRAFYRLT
VLPLATRVTAALAHWLARHTGEAVEIKPDLDQVPALAAERDAQWSRVAGADFLTQAEKRALLGLPAVSADE

Specific function: Unknown

COG id: COG4695

COG function: function code S; Phage-related protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage portal family. HK97 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006944
- InterPro:   IPR006427 [H]

Pfam domain/function: PF04860 Phage_portal [H]

EC number: NA

Molecular weight: Translated: 42446; Mature: 42315

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFNFLRRGAQAEVPEKKASATGPVVAYQTTGRVAWSPRDAVSLTRTGFSSNPVGFRSVK
CCHHHHHCCCCCCCCCHHCCCCCCEEEEEECCCEEECCCCHHHHEECCCCCCCCCHHHHH
LIAEAAAALPLVLQDAEQRFEAHPLVDLVARPNPMQGRAELLEALYAQLLLTGNAYVEAV
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
SDLDGAPEELHVLRSDRMSVVPGPDGWPVAYEYAVGGRKHRFDASGPVVPVCHIKSFHPQ
HHCCCCHHHHHHHHCCCEEECCCCCCCCEEEEEECCCCCEECCCCCCEEEEEECCCCCCC
DDHYGFSPMQAAAMAVDVHNSASRWSKALLDNAARPSGAIVYRGAEGQGSMNSDQYDRLV
CCCCCCCHHHHHHEEEECCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHH
SEMESHHQGARNAGRPMLLEGGLDWKPMGFSPSDMEFQKTKESAAREIALAFGVPPMLLG
HHHHHHHCCHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
IQGDATYSNYQEAHRAFYRLTVLPLATRVTAALAHWLARHTGEAVEIKPDLDQVPALAAE
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHH
RDAQWSRVAGADFLTQAEKRALLGLPAVSADE
CCCCHHHHHCHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
GFNFLRRGAQAEVPEKKASATGPVVAYQTTGRVAWSPRDAVSLTRTGFSSNPVGFRSVK
CHHHHHCCCCCCCCCHHCCCCCCEEEEEECCCEEECCCCHHHHEECCCCCCCCCHHHHH
LIAEAAAALPLVLQDAEQRFEAHPLVDLVARPNPMQGRAELLEALYAQLLLTGNAYVEAV
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
SDLDGAPEELHVLRSDRMSVVPGPDGWPVAYEYAVGGRKHRFDASGPVVPVCHIKSFHPQ
HHCCCCHHHHHHHHCCCEEECCCCCCCCEEEEEECCCCCEECCCCCCEEEEEECCCCCCC
DDHYGFSPMQAAAMAVDVHNSASRWSKALLDNAARPSGAIVYRGAEGQGSMNSDQYDRLV
CCCCCCCHHHHHHEEEECCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHH
SEMESHHQGARNAGRPMLLEGGLDWKPMGFSPSDMEFQKTKESAAREIALAFGVPPMLLG
HHHHHHHCCHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
IQGDATYSNYQEAHRAFYRLTVLPLATRVTAALAHWLARHTGEAVEIKPDLDQVPALAAE
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHH
RDAQWSRVAGADFLTQAEKRALLGLPAVSADE
CCCCHHHHHCHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA