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The map label for this gene is ycjN [C]

Identifier: 110680067

GI number: 110680067

Start: 2731154

End: 2732413

Strand: Direct

Name: ycjN [C]

Synonym: RD1_2862

Alternate gene names: 110680067

Gene position: 2731154-2732413 (Clockwise)

Preceding gene: 110680064

Following gene: 110680068

Centisome position: 66.08

GC content: 57.86

Gene sequence:

>1260_bases
ATGCGCTTTACCACCACATCCATGGCTTTGGCATTGGCCGGATCAACCATGATCGCAGGGGCCGCACAGGCCGAGCTGAC
GGGGGATCTGAAGATATTCCTCGACACCTCCAATCCGGCACCACGCGCGACGATGGAAAAGATGATCGGTGATTTCGCGG
CCCTGCACCCCGATCTCAACATCGAGACGACGGTGATTGACCGCGAGGCTTACAAAACACAGATCCGCAATTTCCTGACC
GCCGATGCGCCGGATGTGGCGACATGGTATGCCGCCAACCGCATGACACCCTACGTCACCGCAGGGTTGTTCGAGGATGT
CTCCGACCTCTGGGCGGAGCCTGAGATCGCCGAGAACCTCGCGTCCACCAAGGGCGCAATGACGATCGACGGCAAGCAAT
GGGGCGTGCCCTACACCTATTATCAGTGGGGCATCTATTACCGCAAAGACATCTACGAAGAACTTGGCCTGTCCGAACCC
GCAACGTTCGATGAAATGAAATCGAATTGTCAGGTCATTATCGATTCAGGTCGTGCCTGCTATACCATCGGGTCCAAATT
CCTGTGGACGGCGGGGGGCTGGTTTGACTATCTCAACATGCGCACCAATGGCTTTGATTTCCACATGGCGCTGGCCGCCG
GTGAGGTGAAATGGACCGATGACCGGGTCCGCGCCACCTTTGCGAACTGGCGCGAATTGATCGACATGGGCGCCTTTGTC
GAGAACCATCAGAACTATTCCTGGCAGGAAGCGCTGCCCTTCATGGTCAAGGGCGAGGCTGCCGCCTACCTCATGGGCAA
CTTTGCCGTGGCTCCGCTGCGCGAGGCGGGTTTGACCGATGATCAGCTGGATTTCTACCAGTTCCCCGTGATCAACCCAG
ATGTCGCATTGGCCGAGGACGCGCCGACGGATACGTTCCACATCCCATCCGGCGCCCAGAACAAGGAAGCCGCGCGCGAA
TTCCTGCGCTACGTGGTCTCTGCGGATGTCCAGACCGAGATCAACAATGGCGCAAACCTTGGTCAGCTGCCGATCAACGC
CAGCGCGTCGGTGGATGATGATAAATTCCTGAACGAGGGATTTGCGATGCTGTCATCCAACTCTCCGGGCGGTGTCGCGC
AGTTCTTTGACCGCGACTACCCGGCGGAAATGGCTGCCGAAGCCATGCAGGGTTTGCAGGAATTCATGGTGATTCCCGAC
AACCTCGATGACATCCTTAACCGTCTCGACAAGGTGGCCGAGCGCGTTTACGCCAAGTAA

Upstream 100 bases:

>100_bases
TCTAGGCAGATTGCGCTGTAGTTTTCAATATATAAAACCAAGTTTCAAATAATGAAACTCATATGATCATATGACGCAAT
CGTACCTTAGGGAGGACACC

Downstream 100 bases:

>100_bases
ATCCAATGTCAGGCCGGATGCTCACGCGCCCGGCCTGATGTCGCCTCGCAGGTTGGCATGCTGGCCAAAGAGGGTCCGCA
CGCCGCAGGAGATGCTTCAT

Product: ABC transporter, substrate-binding protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MRFTTTSMALALAGSTMIAGAAQAELTGDLKIFLDTSNPAPRATMEKMIGDFAALHPDLNIETTVIDREAYKTQIRNFLT
ADAPDVATWYAANRMTPYVTAGLFEDVSDLWAEPEIAENLASTKGAMTIDGKQWGVPYTYYQWGIYYRKDIYEELGLSEP
ATFDEMKSNCQVIIDSGRACYTIGSKFLWTAGGWFDYLNMRTNGFDFHMALAAGEVKWTDDRVRATFANWRELIDMGAFV
ENHQNYSWQEALPFMVKGEAAAYLMGNFAVAPLREAGLTDDQLDFYQFPVINPDVALAEDAPTDTFHIPSGAQNKEAARE
FLRYVVSADVQTEINNGANLGQLPINASASVDDDKFLNEGFAMLSSNSPGGVAQFFDRDYPAEMAAEAMQGLQEFMVIPD
NLDDILNRLDKVAERVYAK

Sequences:

>Translated_419_residues
MRFTTTSMALALAGSTMIAGAAQAELTGDLKIFLDTSNPAPRATMEKMIGDFAALHPDLNIETTVIDREAYKTQIRNFLT
ADAPDVATWYAANRMTPYVTAGLFEDVSDLWAEPEIAENLASTKGAMTIDGKQWGVPYTYYQWGIYYRKDIYEELGLSEP
ATFDEMKSNCQVIIDSGRACYTIGSKFLWTAGGWFDYLNMRTNGFDFHMALAAGEVKWTDDRVRATFANWRELIDMGAFV
ENHQNYSWQEALPFMVKGEAAAYLMGNFAVAPLREAGLTDDQLDFYQFPVINPDVALAEDAPTDTFHIPSGAQNKEAARE
FLRYVVSADVQTEINNGANLGQLPINASASVDDDKFLNEGFAMLSSNSPGGVAQFFDRDYPAEMAAEAMQGLQEFMVIPD
NLDDILNRLDKVAERVYAK
>Mature_419_residues
MRFTTTSMALALAGSTMIAGAAQAELTGDLKIFLDTSNPAPRATMEKMIGDFAALHPDLNIETTVIDREAYKTQIRNFLT
ADAPDVATWYAANRMTPYVTAGLFEDVSDLWAEPEIAENLASTKGAMTIDGKQWGVPYTYYQWGIYYRKDIYEELGLSEP
ATFDEMKSNCQVIIDSGRACYTIGSKFLWTAGGWFDYLNMRTNGFDFHMALAAGEVKWTDDRVRATFANWRELIDMGAFV
ENHQNYSWQEALPFMVKGEAAAYLMGNFAVAPLREAGLTDDQLDFYQFPVINPDVALAEDAPTDTFHIPSGAQNKEAARE
FLRYVVSADVQTEINNGANLGQLPINASASVDDDKFLNEGFAMLSSNSPGGVAQFFDRDYPAEMAAEAMQGLQEFMVIPD
NLDDILNRLDKVAERVYAK

Specific function: Probably part of a binding-protein-dependent transport system PH1036/38/39 [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 46565; Mature: 46565

Theoretical pI: Translated: 4.13; Mature: 4.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFTTTSMALALAGSTMIAGAAQAELTGDLKIFLDTSNPAPRATMEKMIGDFAALHPDLN
CCEEHHHHHHHHCCCHHCCCCCHHEECCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCC
IETTVIDREAYKTQIRNFLTADAPDVATWYAANRMTPYVTAGLFEDVSDLWAEPEIAENL
EEEEEECHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHH
ASTKGAMTIDGKQWGVPYTYYQWGIYYRKDIYEELGLSEPATFDEMKSNCQVIIDSGRAC
HHCCCCEEECCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEECCCEE
YTIGSKFLWTAGGWFDYLNMRTNGFDFHMALAAGEVKWTDDRVRATFANWRELIDMGAFV
EEECCCEEEECCCHHHHHCCCCCCCEEEEEEEECCEEECCHHHHHHHHHHHHHHHHHHHH
ENHQNYSWQEALPFMVKGEAAAYLMGNFAVAPLREAGLTDDQLDFYQFPVINPDVALAED
HCCCCCCHHHHCCEEEECCEEEEEECCCCCCCHHHCCCCCCCCCEEECCCCCCCCEECCC
APTDTFHIPSGAQNKEAAREFLRYVVSADVQTEINNGANLGQLPINASASVDDDKFLNEG
CCCCEEECCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHC
FAMLSSNSPGGVAQFFDRDYPAEMAAEAMQGLQEFMVIPDNLDDILNRLDKVAERVYAK
HHEECCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRFTTTSMALALAGSTMIAGAAQAELTGDLKIFLDTSNPAPRATMEKMIGDFAALHPDLN
CCEEHHHHHHHHCCCHHCCCCCHHEECCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCC
IETTVIDREAYKTQIRNFLTADAPDVATWYAANRMTPYVTAGLFEDVSDLWAEPEIAENL
EEEEEECHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHH
ASTKGAMTIDGKQWGVPYTYYQWGIYYRKDIYEELGLSEPATFDEMKSNCQVIIDSGRAC
HHCCCCEEECCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEECCCEE
YTIGSKFLWTAGGWFDYLNMRTNGFDFHMALAAGEVKWTDDRVRATFANWRELIDMGAFV
EEECCCEEEECCCHHHHHCCCCCCCEEEEEEEECCEEECCHHHHHHHHHHHHHHHHHHHH
ENHQNYSWQEALPFMVKGEAAAYLMGNFAVAPLREAGLTDDQLDFYQFPVINPDVALAED
HCCCCCCHHHHCCEEEECCEEEEEECCCCCCCHHHCCCCCCCCCEEECCCCCCCCEECCC
APTDTFHIPSGAQNKEAAREFLRYVVSADVQTEINNGANLGQLPINASASVDDDKFLNEG
CCCCEEECCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHC
FAMLSSNSPGGVAQFFDRDYPAEMAAEAMQGLQEFMVIPDNLDDILNRLDKVAERVYAK
HHEECCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]