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The map label for this gene is 110680047

Identifier: 110680047

GI number: 110680047

Start: 2711835

End: 2713124

Strand: Reverse

Name: 110680047

Synonym: RD1_2842

Alternate gene names: NA

Gene position: 2713124-2711835 (Counterclockwise)

Preceding gene: 110680053

Following gene: 110680046

Centisome position: 65.64

GC content: 62.33

Gene sequence:

>1290_bases
ATGCCACGCGAGGGACTGACAGGAAGCCGGATCCGAGAACGGCGCTCCGTCGCCGGATTGAAACAGGCGGATCTTGCACG
TGCGCTTGGAATCTCGCCCTCATATCTCAACTTAATCGAGCATAACCGGCGCAGAATCGGCGGCAAGCTGCTGTTGGATA
TCGCGCGCGTCCTTGGGGTCGAGCCGTCGATGCTGACGGAAGGTGCCGAAGCTGCGCTCATCGCCACATTGCGCGAAGCG
GCCAAGGCGGCCAACCTGACCGCCGCCGAGGTGGCGCGCGCGGATGAATTGACGGGCCGCTTTCCGGGCTGGGCTGAAAT
CCTCGCCTCCGGGCATCGGCGGATCACCACGCTGGAGCGGACCGTCGAAGCGCTCAGTGACCGGTTGACCCATGACCCCA
AGCTCGCAGCGTCGGTGCATGAGTTGCTCTCCACTGCCGCGGCGATCCGTTCCACCGCCTCGATCCTGGCCGAGGAAAAG
GACATTGAGGCGGAGTGGCGCGACCGCTTTCATTCGAACCTCAATGAGGACAGCAAGCGACTGGCAGACAGCTCCAAGGC
CTTGGTGAATTACTTCGAAGCCGGGCAGGACGAAGCAACCGTCGCCAACAGCCCGCAGGAAGAAGTCGATGCCTTTCTGG
CCCATCACAACTATCATTTCAAAGCGCTGGAAACGGGGGAGCATTCCGTTGACGATGTGATTGCAAGGGCGGACAATCTG
CGCAGTTCGACCGCGCGGGCCCTTGCGCGCGGGATGCTGGTCAGAATGCAGGCGGATGCCGCGAAAGTGCCCATGCCCGC
CCTTGATGCGGCGCTGGAAAAGGTTGGCCTTGAGCCGCTTGCATTGGCCGCACGCCTTGATGCACCAGTGGCGGTTGTCT
TGCGCCGCATCGCGGCCAGCGCTGCTTTTGAAACCGGGCTGGTCATCTGTGACCGAGCGGGCAGTATTTTGCTGCGCAAA
TCCGTCGGTCAGATGGTGATGCCGCGTTTTGGTGCAGCCTGCGCGCTCTGGCCGTTGTTTTCCGCGCTGTGCCAGCCCGG
TCAAGTGATCCGGACACCATTGGTGCAACTGGGACGGGGCCGGGCGCATTTTGACTGCTTTGCCGTGGCAGAGGTTGTCG
GAGAGACACAGTATAACGCGCCGCCGCTGATTGAGGCCAATATGTTGCTGATCGCCAATTCCGCCCCGGCGGATGACGGT
GCTCTTGAGGTTGGTTCAACCTGCGGTGTGTGTCCCAAGGCAGAGTGCCCGGGCAGGCGCGAGCCGTCCATTCTGATGGC
GGGGCTTTAG

Upstream 100 bases:

>100_bases
TTGTAAATAACTGCACAAATAGTGCAGGGTGTTTGTAAATTTTATAATGTTGCGGTGCAGAAAGCCATTGAATTGACCCA
GCTTTAGCCAGAGGAGCCAT

Downstream 100 bases:

>100_bases
CTTGAAATCCGGGTTCAAAGCGCGCGCGATCGCCGTTGCGCACCCCATGCCGGAACGCGATGCCAAAGGTTGGGCAAAGC
GGTTTTGACATGGCCACAAA

Product: transcriptional regulator, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 429; Mature: 428

Protein sequence:

>429_residues
MPREGLTGSRIRERRSVAGLKQADLARALGISPSYLNLIEHNRRRIGGKLLLDIARVLGVEPSMLTEGAEAALIATLREA
AKAANLTAAEVARADELTGRFPGWAEILASGHRRITTLERTVEALSDRLTHDPKLAASVHELLSTAAAIRSTASILAEEK
DIEAEWRDRFHSNLNEDSKRLADSSKALVNYFEAGQDEATVANSPQEEVDAFLAHHNYHFKALETGEHSVDDVIARADNL
RSSTARALARGMLVRMQADAAKVPMPALDAALEKVGLEPLALAARLDAPVAVVLRRIAASAAFETGLVICDRAGSILLRK
SVGQMVMPRFGAACALWPLFSALCQPGQVIRTPLVQLGRGRAHFDCFAVAEVVGETQYNAPPLIEANMLLIANSAPADDG
ALEVGSTCGVCPKAECPGRREPSILMAGL

Sequences:

>Translated_429_residues
MPREGLTGSRIRERRSVAGLKQADLARALGISPSYLNLIEHNRRRIGGKLLLDIARVLGVEPSMLTEGAEAALIATLREA
AKAANLTAAEVARADELTGRFPGWAEILASGHRRITTLERTVEALSDRLTHDPKLAASVHELLSTAAAIRSTASILAEEK
DIEAEWRDRFHSNLNEDSKRLADSSKALVNYFEAGQDEATVANSPQEEVDAFLAHHNYHFKALETGEHSVDDVIARADNL
RSSTARALARGMLVRMQADAAKVPMPALDAALEKVGLEPLALAARLDAPVAVVLRRIAASAAFETGLVICDRAGSILLRK
SVGQMVMPRFGAACALWPLFSALCQPGQVIRTPLVQLGRGRAHFDCFAVAEVVGETQYNAPPLIEANMLLIANSAPADDG
ALEVGSTCGVCPKAECPGRREPSILMAGL
>Mature_428_residues
PREGLTGSRIRERRSVAGLKQADLARALGISPSYLNLIEHNRRRIGGKLLLDIARVLGVEPSMLTEGAEAALIATLREAA
KAANLTAAEVARADELTGRFPGWAEILASGHRRITTLERTVEALSDRLTHDPKLAASVHELLSTAAAIRSTASILAEEKD
IEAEWRDRFHSNLNEDSKRLADSSKALVNYFEAGQDEATVANSPQEEVDAFLAHHNYHFKALETGEHSVDDVIARADNLR
SSTARALARGMLVRMQADAAKVPMPALDAALEKVGLEPLALAARLDAPVAVVLRRIAASAAFETGLVICDRAGSILLRKS
VGQMVMPRFGAACALWPLFSALCQPGQVIRTPLVQLGRGRAHFDCFAVAEVVGETQYNAPPLIEANMLLIANSAPADDGA
LEVGSTCGVCPKAECPGRREPSILMAGL

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018653
- InterPro:   IPR010359
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF09856 DUF2083; PF06114 DUF955; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 45945; Mature: 45814

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPREGLTGSRIRERRSVAGLKQADLARALGISPSYLNLIEHNRRRIGGKLLLDIARVLGV
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
EPSMLTEGAEAALIATLREAAKAANLTAAEVARADELTGRFPGWAEILASGHRRITTLER
CHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHH
TVEALSDRLTHDPKLAASVHELLSTAAAIRSTASILAEEKDIEAEWRDRFHSNLNEDSKR
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH
LADSSKALVNYFEAGQDEATVANSPQEEVDAFLAHHNYHFKALETGEHSVDDVIARADNL
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHH
RSSTARALARGMLVRMQADAAKVPMPALDAALEKVGLEPLALAARLDAPVAVVLRRIAAS
HHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHH
AAFETGLVICDRAGSILLRKSVGQMVMPRFGAACALWPLFSALCQPGQVIRTPLVQLGRG
HHHHCCEEEECCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
RAHFDCFAVAEVVGETQYNAPPLIEANMLLIANSAPADDGALEVGSTCGVCPKAECPGRR
CCHHHHHHHHHHHHCCCCCCCCCEECCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCC
EPSILMAGL
CCCEEECCC
>Mature Secondary Structure 
PREGLTGSRIRERRSVAGLKQADLARALGISPSYLNLIEHNRRRIGGKLLLDIARVLGV
CCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
EPSMLTEGAEAALIATLREAAKAANLTAAEVARADELTGRFPGWAEILASGHRRITTLER
CHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHH
TVEALSDRLTHDPKLAASVHELLSTAAAIRSTASILAEEKDIEAEWRDRFHSNLNEDSKR
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH
LADSSKALVNYFEAGQDEATVANSPQEEVDAFLAHHNYHFKALETGEHSVDDVIARADNL
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHH
RSSTARALARGMLVRMQADAAKVPMPALDAALEKVGLEPLALAARLDAPVAVVLRRIAAS
HHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHH
AAFETGLVICDRAGSILLRKSVGQMVMPRFGAACALWPLFSALCQPGQVIRTPLVQLGRG
HHHHCCEEEECCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
RAHFDCFAVAEVVGETQYNAPPLIEANMLLIANSAPADDGALEVGSTCGVCPKAECPGRR
CCHHHHHHHHHHHHCCCCCCCCCEECCEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCC
EPSILMAGL
CCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]