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The map label for this gene is yycF [H]

Identifier: 110680046

GI number: 110680046

Start: 2711271

End: 2711654

Strand: Reverse

Name: yycF [H]

Synonym: RD1_2841

Alternate gene names: 110680046

Gene position: 2711654-2711271 (Counterclockwise)

Preceding gene: 110680047

Following gene: 110680045

Centisome position: 65.61

GC content: 56.77

Gene sequence:

>384_bases
ATGAGCAAACACGTACTTTTGGTCGAGGATGAGTTGAACATCATCGAGGCGATCCGCTTTTTGCTCACGCGCGAAGGATT
TCAGGTGGATACCCATAGCAACGGTGCGGATGCATCCGAGACCATACGGGCATTGCAACCGGATCTGGTTGTGCTGGACG
TGATGCTTCCGGGCAAGAGCGGGTTTGATATTCTCGAGGAATTGCGCGCAGATGACGCAACCGCCGATCTGCCGGTTCTG
ATGCTCACCGCCCGTGGCCAGAGCCGGGACAGGGAGATGGCCGAGAAAGCGGGTGTAAGCCGCTTCATGACCAAGCCGTT
CTCCAATGCCGAGGTGCTCACCGCTGTGCGGGATCTGCTCTACGTTCATCAACAGAAAGGCTGA

Upstream 100 bases:

>100_bases
GGTTTTGACATGGCCACAAAAACCTAGAATAACTGGTTCATCCCCTTGGGCAGATTTGATTGCGAAGGATCTGGCGCGGG
GACCCTTGGAGGAGGGACGC

Downstream 100 bases:

>100_bases
CGCCATGGCGCGCGACCCGCTGCCACTGTTTCTGGAGCGAGGTGTTTACCGGCGACGTCGGATGATGGATGCACTGCGGC
TCTTGACGGTGCTCGGGGTG

Product: response regulator receiver domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MSKHVLLVEDELNIIEAIRFLLTREGFQVDTHSNGADASETIRALQPDLVVLDVMLPGKSGFDILEELRADDATADLPVL
MLTARGQSRDREMAEKAGVSRFMTKPFSNAEVLTAVRDLLYVHQQKG

Sequences:

>Translated_127_residues
MSKHVLLVEDELNIIEAIRFLLTREGFQVDTHSNGADASETIRALQPDLVVLDVMLPGKSGFDILEELRADDATADLPVL
MLTARGQSRDREMAEKAGVSRFMTKPFSNAEVLTAVRDLLYVHQQKG
>Mature_126_residues
SKHVLLVEDELNIIEAIRFLLTREGFQVDTHSNGADASETIRALQPDLVVLDVMLPGKSGFDILEELRADDATADLPVLM
LTARGQSRDREMAEKAGVSRFMTKPFSNAEVLTAVRDLLYVHQQKG

Specific function: Member of the two-component regulatory system YycG/YycF involved in the regulation of the ftsAZ operon, the yocH, ykvT, cwlO, lytE, ydjM, yjeA, yoeB genes and the tagAB and tagDEF operons. Probably phosphorylates YycF. Binds to the ftsAZ P1 promoter seque

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786599, Length=120, Percent_Identity=37.5, Blast_Score=91, Evalue=2e-20,
Organism=Escherichia coli, GI1790860, Length=116, Percent_Identity=40.5172413793103, Blast_Score=80, Evalue=6e-17,
Organism=Escherichia coli, GI1786784, Length=116, Percent_Identity=38.7931034482759, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI87082012, Length=122, Percent_Identity=37.7049180327869, Blast_Score=71, Evalue=2e-14,
Organism=Escherichia coli, GI1790863, Length=119, Percent_Identity=31.0924369747899, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI1789809, Length=116, Percent_Identity=31.8965517241379, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI1789402, Length=108, Percent_Identity=37.037037037037, Blast_Score=68, Evalue=2e-13,
Organism=Escherichia coli, GI1788394, Length=119, Percent_Identity=30.2521008403361, Blast_Score=66, Evalue=9e-13,
Organism=Escherichia coli, GI1790552, Length=123, Percent_Identity=31.7073170731707, Blast_Score=64, Evalue=4e-12,
Organism=Escherichia coli, GI2367329, Length=116, Percent_Identity=37.0689655172414, Blast_Score=62, Evalue=1e-11,
Organism=Escherichia coli, GI1787375, Length=116, Percent_Identity=30.1724137931034, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1788191, Length=106, Percent_Identity=34.9056603773585, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1787229, Length=121, Percent_Identity=28.099173553719, Blast_Score=60, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 14109; Mature: 13978

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKHVLLVEDELNIIEAIRFLLTREGFQVDTHSNGADASETIRALQPDLVVLDVMLPGKS
CCCCEEEEECCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHCCCEEEEEEEECCCC
GFDILEELRADDATADLPVLMLTARGQSRDREMAEKAGVSRFMTKPFSNAEVLTAVRDLL
CHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
YVHQQKG
HHHHCCC
>Mature Secondary Structure 
SKHVLLVEDELNIIEAIRFLLTREGFQVDTHSNGADASETIRALQPDLVVLDVMLPGKS
CCCEEEEECCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHCCCEEEEEEEECCCC
GFDILEELRADDATADLPVLMLTARGQSRDREMAEKAGVSRFMTKPFSNAEVLTAVRDLL
CHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
YVHQQKG
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 9829949; 10878122 [H]