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The map label for this gene is degU [H]

Identifier: 110680018

GI number: 110680018

Start: 2679865

End: 2680515

Strand: Direct

Name: degU [H]

Synonym: RD1_2811

Alternate gene names: 110680018

Gene position: 2679865-2680515 (Clockwise)

Preceding gene: 110680017

Following gene: 110680019

Centisome position: 64.84

GC content: 58.83

Gene sequence:

>651_bases
ATGACACAGACATCCCCGGACCCGATCAAGGTATTGATCATTGATGACCATCCGATGGTCGCCGAAGGAATCCAGTCGAT
TCTGGAAAGCTACGAGGATCTGAGCGTCGTGGGCAGTTGCAATTCCGCGCGTGACGCGATCGCGCGGCTCGACCATTTTG
ATCCGGATGTGATCCTGATGGATCTGAACATGCCGGATATGGGTGGGCTGACCGCGACCGAGATCGTGCTGGAACGCCGC
CCCGGCACGCGCATCCTGATCCTGTCGATGCATGACAGCGCCGAATATATATCATCCGCGCTGAGCCATGGGGCCATGGG
CTATATCCTCAAGGATGTACCGACCGACGAAATCAAACAGGCCATAGACGCCGTCATGGCAGGTGATCAATACCTCTGCA
CCGGCGCGCGCGGGTCGCTGCAACCCAAGGAAGGCGAGGCGCGCGAAGCGTTGACCGGGCGCGAGCAGACGATCCTGCTG
CAACTTGCACAGGGTAAATCCAACAAGGATGTCGCCACAGCGCTGGATATTTCCGTCCGCACGGTCGAGACACACCGCAA
GAACATCAAACGCAAACTGGGCATTTCCAGCACCGCCGGTCTGACCCGATATGCGATGGAGCATGGCGTGCTGCAGGGCA
CCGGCATCTGA

Upstream 100 bases:

>100_bases
GCTCGGGCACGGGCACGGTTGTTGAGGTGAGCGTTCCGCTGTCCCATCTGCTGCCCCCCGAACCCGAACCCCCACAGCCC
AATCAGCAAAAGCAGACCGC

Downstream 100 bases:

>100_bases
CGCGGTGCCATTGGCTGTTGGCGCGGCTTGACGCGCACAAATCAACCCGGGGGTGCTGCCGCGTCCAAAGCCCGCGCCGC
CCGCCTGTGCCACATCGTTT

Product: transcription regulatory protein degU, putative

Products: NA

Alternate protein names: Nitrogen regulation protein C [H]

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MTQTSPDPIKVLIIDDHPMVAEGIQSILESYEDLSVVGSCNSARDAIARLDHFDPDVILMDLNMPDMGGLTATEIVLERR
PGTRILILSMHDSAEYISSALSHGAMGYILKDVPTDEIKQAIDAVMAGDQYLCTGARGSLQPKEGEAREALTGREQTILL
QLAQGKSNKDVATALDISVRTVETHRKNIKRKLGISSTAGLTRYAMEHGVLQGTGI

Sequences:

>Translated_216_residues
MTQTSPDPIKVLIIDDHPMVAEGIQSILESYEDLSVVGSCNSARDAIARLDHFDPDVILMDLNMPDMGGLTATEIVLERR
PGTRILILSMHDSAEYISSALSHGAMGYILKDVPTDEIKQAIDAVMAGDQYLCTGARGSLQPKEGEAREALTGREQTILL
QLAQGKSNKDVATALDISVRTVETHRKNIKRKLGISSTAGLTRYAMEHGVLQGTGI
>Mature_215_residues
TQTSPDPIKVLIIDDHPMVAEGIQSILESYEDLSVVGSCNSARDAIARLDHFDPDVILMDLNMPDMGGLTATEIVLERRP
GTRILILSMHDSAEYISSALSHGAMGYILKDVPTDEIKQAIDAVMAGDQYLCTGARGSLQPKEGEAREALTGREQTILLQ
LAQGKSNKDVATALDISVRTVETHRKNIKRKLGISSTAGLTRYAMEHGVLQGTGI

Specific function: Member of the two-component regulatory system nreB/nreC involved in the control of dissimilatory nitrate/nitrite reduction in response to oxygen. Phosphorylated nreC binds to a GC-rich palindromic sequence at the promoters of the nitrate (narGHJI) and nit

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788222, Length=208, Percent_Identity=31.7307692307692, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1788521, Length=202, Percent_Identity=35.6435643564356, Blast_Score=110, Evalue=6e-26,
Organism=Escherichia coli, GI1790102, Length=196, Percent_Identity=35.7142857142857, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1786747, Length=202, Percent_Identity=28.7128712871287, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787473, Length=190, Percent_Identity=34.2105263157895, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1788712, Length=202, Percent_Identity=25.7425742574257, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788546, Length=202, Percent_Identity=28.7128712871287, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI87082052, Length=167, Percent_Identity=32.3353293413174, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23357; Mature: 23226

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQTSPDPIKVLIIDDHPMVAEGIQSILESYEDLSVVGSCNSARDAIARLDHFDPDVILM
CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHCCCCCEEEE
DLNMPDMGGLTATEIVLERRPGTRILILSMHDSAEYISSALSHGAMGYILKDVPTDEIKQ
ECCCCCCCCCHHHHHEEECCCCCEEEEEEECCCHHHHHHHHHCCCCEEHCCCCCHHHHHH
AIDAVMAGDQYLCTGARGSLQPKEGEAREALTGREQTILLQLAQGKSNKDVATALDISVR
HHHHHHCCCEEEEECCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCEEEEEEEEEE
TVETHRKNIKRKLGISSTAGLTRYAMEHGVLQGTGI
HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TQTSPDPIKVLIIDDHPMVAEGIQSILESYEDLSVVGSCNSARDAIARLDHFDPDVILM
CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHCCCCCEEEE
DLNMPDMGGLTATEIVLERRPGTRILILSMHDSAEYISSALSHGAMGYILKDVPTDEIKQ
ECCCCCCCCCHHHHHEEECCCCCEEEEEEECCCHHHHHHHHHCCCCEEHCCCCCHHHHHH
AIDAVMAGDQYLCTGARGSLQPKEGEAREALTGREQTILLQLAQGKSNKDVATALDISVR
HHHHHHCCCEEEEECCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCEEEEEEEEEE
TVETHRKNIKRKLGISSTAGLTRYAMEHGVLQGTGI
HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA