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The map label for this gene is sufD [H]

Identifier: 110679913

GI number: 110679913

Start: 2565979

End: 2567259

Strand: Reverse

Name: sufD [H]

Synonym: RD1_2692

Alternate gene names: 110679913

Gene position: 2567259-2565979 (Counterclockwise)

Preceding gene: 110679914

Following gene: 110679912

Centisome position: 62.11

GC content: 60.97

Gene sequence:

>1281_bases
ATGGCCGAAGCAGCACTGAAAACCAGCACGACAGAGGCGCGGTTGGCGCGTCTCGCGCTGCCGGAAGGCGGTTGGACCGC
AGCCGCACGCAAGGACGCAAAGGCGCGTGTCGAGGCGATGGGCCTGCCGGACCGGCGCGACGAGTATTGGAAATACACCC
ACCCCGACACGCTGACACAGGCTGATGCCGTGCCCGCGGCACTGTTTCACAATGATGAGGCACCGCTTTTTGGTGAGATT
GACCGTATCCGGATCGTCTTCGTGGATGGGGTGTTTGATGCGGAAGCCTCTGATGATCTTGTGGGCGAGGGGCTTGCCAT
TGAGCGTCTGGCGGAGCAGTCGGCGGATATTCACTGGGCGCGTGACCTATACGGTGCATTGGAAGCCCGCGGACAGTCAC
CGGTCGAACGCCCGCTCGCGGCGCTCAACACGGCCTATGCAACCGATGGTGTGCTGATCCATGTCACCGGAAAGGCCAGC
AAACCGGTGAGCCTGCACTATCAGCACCGTGATGAGACCTCCGATGCGATCCTGCACCATGTGATCAAGGTCGACGCAGG
CGCTGAACTGACCCTGCTGGAAACCGGCCCGGCGGCGGCGCGCTTTAACAAGGTCATGGAAGTGGACATCGCCGACACGG
GCGTTTTCCACCATGTGCGGGCGCAGGGGCGTGATCATGAGCGGCGTGCGGCGACCCACATCTTTACCCGTCTGGGCTCC
GAGAGCACTTTCAAAAGCTTCACGCTGACCGCGAATGGTGTTCTGACCCGCAATGAGTGCATTATCGAACTGACAGGCGA
TGATGCCATTGCCCATGTGGCGGGCGCCTGTGTCGGCGACGGTGATTTCCATCACGACGACACGGTGTTCATCACCCATG
ACGCGGTGAATTGTGAGAGCCGACAGGTCTTCAAGAAGGTGCTGCGCAACGGTGCCACCGGCGTGTTTCAGGGCAAGATT
CTGGTCCAGCCCGGTGCGCAGAAAACCGATGGCTACCAGATCAGCCAGTCGTTGCTGCTGGATGACGACAGCCAGTTTCT
GGCGAAACCGGAGCTTGAGATCTACGCGGACGATGTGGCCTGTTCACACGGTTCCACCTCGGGGGCGATTGACGAGACCG
CGCTTTTCTATCTGAGGTCCCGCGGGGTGCCCCGCGCGCAGGCCACGGATTTGCTGACCCTTGCGTTTCTGGCCGAAGCG
GTCGATGAGATCGAAGATGAAGCGTTGCGTGAAGAGATCGTTGACCGTCTCGCAGGCTGGCTGGAGCGGCATCGAAAGTA
A

Upstream 100 bases:

>100_bases
ATATCATGGCCGATGGCAAGATCGTGAAAACGGGCGGTCCCGAACTTGCGCTTGAAGTCGAGAACAACGGCTACGGCAAC
ATTCTGGCAGAGGTGGCATA

Downstream 100 bases:

>100_bases
TGGCGGTCACCCGCAATATCACCGCTACCTATAGGGGGCCCGGTCGTGTTGTGACCGGGCTTTTGGCACTGGGGCAACGC
GAAGACCGTGCGCTGGCCTA

Product: FeS assembly protein SufD, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 425

Protein sequence:

>426_residues
MAEAALKTSTTEARLARLALPEGGWTAAARKDAKARVEAMGLPDRRDEYWKYTHPDTLTQADAVPAALFHNDEAPLFGEI
DRIRIVFVDGVFDAEASDDLVGEGLAIERLAEQSADIHWARDLYGALEARGQSPVERPLAALNTAYATDGVLIHVTGKAS
KPVSLHYQHRDETSDAILHHVIKVDAGAELTLLETGPAAARFNKVMEVDIADTGVFHHVRAQGRDHERRAATHIFTRLGS
ESTFKSFTLTANGVLTRNECIIELTGDDAIAHVAGACVGDGDFHHDDTVFITHDAVNCESRQVFKKVLRNGATGVFQGKI
LVQPGAQKTDGYQISQSLLLDDDSQFLAKPELEIYADDVACSHGSTSGAIDETALFYLRSRGVPRAQATDLLTLAFLAEA
VDEIEDEALREEIVDRLAGWLERHRK

Sequences:

>Translated_426_residues
MAEAALKTSTTEARLARLALPEGGWTAAARKDAKARVEAMGLPDRRDEYWKYTHPDTLTQADAVPAALFHNDEAPLFGEI
DRIRIVFVDGVFDAEASDDLVGEGLAIERLAEQSADIHWARDLYGALEARGQSPVERPLAALNTAYATDGVLIHVTGKAS
KPVSLHYQHRDETSDAILHHVIKVDAGAELTLLETGPAAARFNKVMEVDIADTGVFHHVRAQGRDHERRAATHIFTRLGS
ESTFKSFTLTANGVLTRNECIIELTGDDAIAHVAGACVGDGDFHHDDTVFITHDAVNCESRQVFKKVLRNGATGVFQGKI
LVQPGAQKTDGYQISQSLLLDDDSQFLAKPELEIYADDVACSHGSTSGAIDETALFYLRSRGVPRAQATDLLTLAFLAEA
VDEIEDEALREEIVDRLAGWLERHRK
>Mature_425_residues
AEAALKTSTTEARLARLALPEGGWTAAARKDAKARVEAMGLPDRRDEYWKYTHPDTLTQADAVPAALFHNDEAPLFGEID
RIRIVFVDGVFDAEASDDLVGEGLAIERLAEQSADIHWARDLYGALEARGQSPVERPLAALNTAYATDGVLIHVTGKASK
PVSLHYQHRDETSDAILHHVIKVDAGAELTLLETGPAAARFNKVMEVDIADTGVFHHVRAQGRDHERRAATHIFTRLGSE
STFKSFTLTANGVLTRNECIIELTGDDAIAHVAGACVGDGDFHHDDTVFITHDAVNCESRQVFKKVLRNGATGVFQGKIL
VQPGAQKTDGYQISQSLLLDDDSQFLAKPELEIYADDVACSHGSTSGAIDETALFYLRSRGVPRAQATDLLTLAFLAEAV
DEIEDEALREEIVDRLAGWLERHRK

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=402, Percent_Identity=27.363184079602, Blast_Score=144, Evalue=1e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 46538; Mature: 46407

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEAALKTSTTEARLARLALPEGGWTAAARKDAKARVEAMGLPDRRDEYWKYTHPDTLTQ
CCCCHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCH
ADAVPAALFHNDEAPLFGEIDRIRIVFVDGVFDAEASDDLVGEGLAIERLAEQSADIHWA
HHCCCHHEEECCCCCCCCCCCEEEEEEEECEECCCCCCCHHCCCHHHHHHHHHCCCCHHH
RDLYGALEARGQSPVERPLAALNTAYATDGVLIHVTGKASKPVSLHYQHRDETSDAILHH
HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHH
VIKVDAGAELTLLETGPAAARFNKVMEVDIADTGVFHHVRAQGRDHERRAATHIFTRLGS
HHEECCCCEEEEEECCCCHHHHCCEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHCCC
ESTFKSFTLTANGVLTRNECIIELTGDDAIAHVAGACVGDGDFHHDDTVFITHDAVNCES
CCCCEEEEEEECCEEECCCEEEEECCCCHHHHHHHHEECCCCCCCCCEEEEEECCCCCHH
RQVFKKVLRNGATGVFQGKILVQPGAQKTDGYQISQSLLLDDDSQFLAKPELEIYADDVA
HHHHHHHHHCCCCEEEECEEEECCCCCCCCCEEHHHHHEECCCCHHHCCCCEEEEECCEE
CSHGSTSGAIDETALFYLRSRGVPRAQATDLLTLAFLAEAVDEIEDEALREEIVDRLAGW
ECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LERHRK
HHHHCC
>Mature Secondary Structure 
AEAALKTSTTEARLARLALPEGGWTAAARKDAKARVEAMGLPDRRDEYWKYTHPDTLTQ
CCCHHCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCH
ADAVPAALFHNDEAPLFGEIDRIRIVFVDGVFDAEASDDLVGEGLAIERLAEQSADIHWA
HHCCCHHEEECCCCCCCCCCCEEEEEEEECEECCCCCCCHHCCCHHHHHHHHHCCCCHHH
RDLYGALEARGQSPVERPLAALNTAYATDGVLIHVTGKASKPVSLHYQHRDETSDAILHH
HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHH
VIKVDAGAELTLLETGPAAARFNKVMEVDIADTGVFHHVRAQGRDHERRAATHIFTRLGS
HHEECCCCEEEEEECCCCHHHHCCEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHCCC
ESTFKSFTLTANGVLTRNECIIELTGDDAIAHVAGACVGDGDFHHDDTVFITHDAVNCES
CCCCEEEEEEECCEEECCCEEEEECCCCHHHHHHHHEECCCCCCCCCEEEEEECCCCCHH
RQVFKKVLRNGATGVFQGKILVQPGAQKTDGYQISQSLLLDDDSQFLAKPELEIYADDVA
HHHHHHHHHCCCCEEEECEEEECCCCCCCCCEEHHHHHEECCCCHHHCCCCEEEEECCEE
CSHGSTSGAIDETALFYLRSRGVPRAQATDLLTLAFLAEAVDEIEDEALREEIVDRLAGW
ECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LERHRK
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10322040 [H]