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The map label for this gene is tsf

Identifier: 110679878

GI number: 110679878

Start: 2531236

End: 2532111

Strand: Reverse

Name: tsf

Synonym: RD1_2652

Alternate gene names: 110679878

Gene position: 2532111-2531236 (Counterclockwise)

Preceding gene: 110679879

Following gene: 110679875

Centisome position: 61.26

GC content: 57.76

Gene sequence:

>876_bases
ATGGCGATTACAGCCGCAATGGTGAAAGAGCTGCGCGACAGCACAGGCGCAGGCATGATGGACGCCAAAAAAGCCTTGAC
CGAGAACAATGGCGATATGGAAGCCGCCGTGGACTGGCTGCGCACCAAGGGCCTTGCCAAGGCCGCCAAGAAATCCGGCC
GCACCGCGGCGGAGGGTCTCGTGGCTGTCAAGGTTCAAGGCGGGCACGGGGTTGCTGTGGAAGTGAACTCCGAAACCGAT
TTTGTCGGCAAAAACGCTGATTTCCAGAAAATGGTTGCAGGCATTGCCGATGTCGCGTTGGGCGCATCCGACATCGACGC
GCTGCGCGCGGCAGACATGGGTGGCAAGACTGTCGAACAGGCAGTGATCGATGCGGTTGCGGTAATTGGCGAAAACATGT
CCGTGCGTCGGATGTCCAGCATTGATGGCGAAAACGTGGTGTCTTATGTGCACAATGCGGCGGCTCCCGGCATGGGCAAG
ATCGGCGTGCTGGTTGCCACGAATGGCGGTGACGAAGCCTTCGGTAAGCAGGTTGCGATGCATATCGCCGCCGTGAATCC
TGCGTCCTTGTCCGAGGCCGATCTGGACCCGGCAGTTGTCGAGAAGGAAAAGCAGGTGCAGATGGATATCGCACGTGAAA
GCGGTAAGCCCGAGCAGGTGATCGAAAAGATGATCATCGGGCGCATGAAAAAATACATGTCCGAAGTGACCCTGTTGAAC
CAGTCCTTCGTTGTGAACCCTGATCTGACAGTTGGCGACGCCGCGAAAGAGGCGGGGGCGACGATCACAGGATTTGTACG
CCTTGAAGTCGGCGAAGGCATTGAAGTTGTCAAAGAGGACTTCGCAGCCGAGGTGGCCAAAGCGGTCAAAGGCTAG

Upstream 100 bases:

>100_bases
GGAAGAAGCGCAAGCCTGAGACATAGTCGCAGGCGCGAAACGTGGGGCAGGGTACATACCTGCCCCGAGAACCTGAATAA
TTCCCAAAGGAGAACCTGAG

Downstream 100 bases:

>100_bases
GGTCTTCGCAAGAATGCGCGGAAGGACGCTCCTGACGGGGCGTCCTTTTTTGTTTAAAGTCAGACACTAGAGATCAACAC
TTAAAGCTTTAAGTGAGCTT

Product: elongation factor Ts

Products: NA

Alternate protein names: EF-Ts

Number of amino acids: Translated: 291; Mature: 290

Protein sequence:

>291_residues
MAITAAMVKELRDSTGAGMMDAKKALTENNGDMEAAVDWLRTKGLAKAAKKSGRTAAEGLVAVKVQGGHGVAVEVNSETD
FVGKNADFQKMVAGIADVALGASDIDALRAADMGGKTVEQAVIDAVAVIGENMSVRRMSSIDGENVVSYVHNAAAPGMGK
IGVLVATNGGDEAFGKQVAMHIAAVNPASLSEADLDPAVVEKEKQVQMDIARESGKPEQVIEKMIIGRMKKYMSEVTLLN
QSFVVNPDLTVGDAAKEAGATITGFVRLEVGEGIEVVKEDFAAEVAKAVKG

Sequences:

>Translated_291_residues
MAITAAMVKELRDSTGAGMMDAKKALTENNGDMEAAVDWLRTKGLAKAAKKSGRTAAEGLVAVKVQGGHGVAVEVNSETD
FVGKNADFQKMVAGIADVALGASDIDALRAADMGGKTVEQAVIDAVAVIGENMSVRRMSSIDGENVVSYVHNAAAPGMGK
IGVLVATNGGDEAFGKQVAMHIAAVNPASLSEADLDPAVVEKEKQVQMDIARESGKPEQVIEKMIIGRMKKYMSEVTLLN
QSFVVNPDLTVGDAAKEAGATITGFVRLEVGEGIEVVKEDFAAEVAKAVKG
>Mature_290_residues
AITAAMVKELRDSTGAGMMDAKKALTENNGDMEAAVDWLRTKGLAKAAKKSGRTAAEGLVAVKVQGGHGVAVEVNSETDF
VGKNADFQKMVAGIADVALGASDIDALRAADMGGKTVEQAVIDAVAVIGENMSVRRMSSIDGENVVSYVHNAAAPGMGKI
GVLVATNGGDEAFGKQVAMHIAAVNPASLSEADLDPAVVEKEKQVQMDIARESGKPEQVIEKMIIGRMKKYMSEVTLLNQ
SFVVNPDLTVGDAAKEAGATITGFVRLEVGEGIEVVKEDFAAEVAKAVKG

Specific function: Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome

COG id: COG0264

COG function: function code J; Translation elongation factor Ts

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the EF-Ts family

Homologues:

Organism=Homo sapiens, GI171846268, Length=306, Percent_Identity=27.7777777777778, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI291084500, Length=325, Percent_Identity=26.1538461538462, Blast_Score=95, Evalue=9e-20,
Organism=Homo sapiens, GI291084502, Length=99, Percent_Identity=40.4040404040404, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI291084498, Length=99, Percent_Identity=40.4040404040404, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI1786366, Length=286, Percent_Identity=49.6503496503497, Blast_Score=268, Evalue=4e-73,
Organism=Caenorhabditis elegans, GI17561440, Length=293, Percent_Identity=27.6450511945392, Blast_Score=100, Evalue=7e-22,
Organism=Drosophila melanogaster, GI19921466, Length=299, Percent_Identity=28.4280936454849, Blast_Score=112, Evalue=2e-25,

Paralogues:

None

Copy number: 2670 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1100 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 4173 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 14563 Molecules/Cell In: Growth Phase, Gluco

Swissprot (AC and ID): EFTS_ROSDO (Q165Z4)

Other databases:

- EMBL:   CP000362
- RefSeq:   YP_682885.1
- ProteinModelPortal:   Q165Z4
- SMR:   Q165Z4
- STRING:   Q165Z4
- GeneID:   4196200
- GenomeReviews:   CP000362_GR
- KEGG:   rde:RD1_2652
- NMPDR:   fig|375451.6.peg.2465
- eggNOG:   COG0264
- HOGENOM:   HBG713289
- OMA:   YLHGTRI
- PhylomeDB:   Q165Z4
- ProtClustDB:   PRK09377
- BioCyc:   RDEN375451:RD1_2652-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00050
- InterPro:   IPR001816
- InterPro:   IPR014039
- InterPro:   IPR018101
- InterPro:   IPR009060
- InterPro:   IPR000449
- Gene3D:   G3DSA:3.30.479.20
- PANTHER:   PTHR11741
- TIGRFAMs:   TIGR00116

Pfam domain/function: PF00889 EF_TS; PF00627 UBA; SSF54713 EF_TS; SSF46934 UBA_like

EC number: NA

Molecular weight: Translated: 30232; Mature: 30101

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS01126 EF_TS_1; PS01127 EF_TS_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAITAAMVKELRDSTGAGMMDAKKALTENNGDMEAAVDWLRTKGLAKAAKKSGRTAAEGL
CCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCE
VAVKVQGGHGVAVEVNSETDFVGKNADFQKMVAGIADVALGASDIDALRAADMGGKTVEQ
EEEEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHH
AVIDAVAVIGENMSVRRMSSIDGENVVSYVHNAAAPGMGKIGVLVATNGGDEAFGKQVAM
HHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHH
HIAAVNPASLSEADLDPAVVEKEKQVQMDIARESGKPEQVIEKMIIGRMKKYMSEVTLLN
HHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
QSFVVNPDLTVGDAAKEAGATITGFVRLEVGEGIEVVKEDFAAEVAKAVKG
CCEEECCCCCCCCHHHHCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AITAAMVKELRDSTGAGMMDAKKALTENNGDMEAAVDWLRTKGLAKAAKKSGRTAAEGL
CCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCE
VAVKVQGGHGVAVEVNSETDFVGKNADFQKMVAGIADVALGASDIDALRAADMGGKTVEQ
EEEEEECCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHH
AVIDAVAVIGENMSVRRMSSIDGENVVSYVHNAAAPGMGKIGVLVATNGGDEAFGKQVAM
HHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHH
HIAAVNPASLSEADLDPAVVEKEKQVQMDIARESGKPEQVIEKMIIGRMKKYMSEVTLLN
HHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC
QSFVVNPDLTVGDAAKEAGATITGFVRLEVGEGIEVVKEDFAAEVAKAVKG
CCEEECCCCCCCCHHHHCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA