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The map label for this gene is pobR

Identifier: 110679813

GI number: 110679813

Start: 2467946

End: 2468749

Strand: Reverse

Name: pobR

Synonym: RD1_2582

Alternate gene names: NA

Gene position: 2468749-2467946 (Counterclockwise)

Preceding gene: 110679815

Following gene: 110679812

Centisome position: 59.73

GC content: 62.56

Gene sequence:

>804_bases
ATGATTGCTGATCTGAGAATTCAAACGCTGGCACAACTGTCGGCCGGGCAGGACTGGCGGCTCTCCTTGCCGCATGACCG
TCCCGAACAGTTGCTGATCTGGGTGACGCGCGGACAGGGTCGATTGCTGCTGGATGGGCAGCGTCGCGGCGTGGGTGCCC
ATAATGCCATTCTGGTCCCGGCCCGCCATCTGTTCGCACTGGACCTTGGCAGGCAGGCGATGGGTCAGGTCGTTGTCCTG
CCCGAAGGGTCGACACTGGATTTTCCGCAGACACCCTCGCAACTGCGGATCCGTGATGCCAGCGCGATGGGGGAGTTGAC
CGGTTTGATCGAAGCTGCCGCGCGCGAGCAGCAAACCGCCCGCCCCCTGATGGAGGCCGCGTTGAGCGCGCATGGCGGCC
TGATTTCCATCTGGCTGCAGCGCCAACTTGCGCTGGAGGAACATATCGCTGCGCGCCCGAATGCGGCGGCGCGCCTGACA
TCGGCCTATGCGGCGCGAATTTCAAAGCACTTTCATCAACCCATGACCATGGCGGATCACGCCGAAGCACTGCAGGTGAC
GCCGACCCACCTGACCCGCGCCTGCAAGGCGGCCACGGGCCGGACGGCCGCAGATTTGCTGACCGATCGGATTTTATATG
AGGCGCGCCAGTTACTGACCAATACGACTGTTCCGGCGCAGGATATCGCCCGTTTTCTCGGGTTTGGCAGTGCTGCCTAT
TTCACGCGCTTCATGGTGCATCACACCAGATCAACGCCCTCCGCCCTGCGACGCGCTGCAACTAAACCTCAAAACGCCGC
CTGA

Upstream 100 bases:

>100_bases
ATCGGCCACAGCACTTTCAAAAAGAGAACTTTCATGCCGCTGATTGGCGAAATTCGGGGCGTTCATTTGACACTATTCAA
CTTTTGCGAGAAAATCAGGA

Downstream 100 bases:

>100_bases
ACAGGTTTGCAACCTCTCGACCACGCGGCGGCCCACCTGTCCCATTTGCGACGTGAACTATGTCGCAAAATTGCAATTTT
AGGGCGCTGGCCTCCATTGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Regulator Of 4HPA-Hydroxylase Operon; Helix-Turn-Helix Domain-Containing Protein; PobR Regulator; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Protein; AraC Family Regulatory Protein; Transcriptional Regulatory Protein; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Transcriptional Regulator PobR; AraC-Type Regulatory Protein

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MIADLRIQTLAQLSAGQDWRLSLPHDRPEQLLIWVTRGQGRLLLDGQRRGVGAHNAILVPARHLFALDLGRQAMGQVVVL
PEGSTLDFPQTPSQLRIRDASAMGELTGLIEAAAREQQTARPLMEAALSAHGGLISIWLQRQLALEEHIAARPNAAARLT
SAYAARISKHFHQPMTMADHAEALQVTPTHLTRACKAATGRTAADLLTDRILYEARQLLTNTTVPAQDIARFLGFGSAAY
FTRFMVHHTRSTPSALRRAATKPQNAA

Sequences:

>Translated_267_residues
MIADLRIQTLAQLSAGQDWRLSLPHDRPEQLLIWVTRGQGRLLLDGQRRGVGAHNAILVPARHLFALDLGRQAMGQVVVL
PEGSTLDFPQTPSQLRIRDASAMGELTGLIEAAAREQQTARPLMEAALSAHGGLISIWLQRQLALEEHIAARPNAAARLT
SAYAARISKHFHQPMTMADHAEALQVTPTHLTRACKAATGRTAADLLTDRILYEARQLLTNTTVPAQDIARFLGFGSAAY
FTRFMVHHTRSTPSALRRAATKPQNAA
>Mature_267_residues
MIADLRIQTLAQLSAGQDWRLSLPHDRPEQLLIWVTRGQGRLLLDGQRRGVGAHNAILVPARHLFALDLGRQAMGQVVVL
PEGSTLDFPQTPSQLRIRDASAMGELTGLIEAAAREQQTARPLMEAALSAHGGLISIWLQRQLALEEHIAARPNAAARLT
SAYAARISKHFHQPMTMADHAEALQVTPTHLTRACKAATGRTAADLLTDRILYEARQLLTNTTVPAQDIARFLGFGSAAY
FTRFMVHHTRSTPSALRRAATKPQNAA

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29202; Mature: 29202

Theoretical pI: Translated: 11.16; Mature: 11.16

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIADLRIQTLAQLSAGQDWRLSLPHDRPEQLLIWVTRGQGRLLLDGQRRGVGAHNAILVP
CCCCHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCEEEEC
ARHLFALDLGRQAMGQVVVLPEGSTLDFPQTPSQLRIRDASAMGELTGLIEAAAREQQTA
HHHHHHHHHCHHHHCCEEEEECCCCCCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHH
RPLMEAALSAHGGLISIWLQRQLALEEHIAARPNAAARLTSAYAARISKHFHQPMTMADH
HHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
AEALQVTPTHLTRACKAATGRTAADLLTDRILYEARQLLTNTTVPAQDIARFLGFGSAAY
HHHEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHH
FTRFMVHHTRSTPSALRRAATKPQNAA
HHHHHHHHCCCCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIADLRIQTLAQLSAGQDWRLSLPHDRPEQLLIWVTRGQGRLLLDGQRRGVGAHNAILVP
CCCCHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCEEEEC
ARHLFALDLGRQAMGQVVVLPEGSTLDFPQTPSQLRIRDASAMGELTGLIEAAAREQQTA
HHHHHHHHHCHHHHCCEEEEECCCCCCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHH
RPLMEAALSAHGGLISIWLQRQLALEEHIAARPNAAARLTSAYAARISKHFHQPMTMADH
HHHHHHHHHHCCCEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
AEALQVTPTHLTRACKAATGRTAADLLTDRILYEARQLLTNTTVPAQDIARFLGFGSAAY
HHHEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHH
FTRFMVHHTRSTPSALRRAATKPQNAA
HHHHHHHHCCCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA