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The map label for this gene is yliC [C]

Identifier: 110679812

GI number: 110679812

Start: 2466694

End: 2467737

Strand: Reverse

Name: yliC [C]

Synonym: RD1_2581

Alternate gene names: 110679812

Gene position: 2467737-2466694 (Counterclockwise)

Preceding gene: 110679813

Following gene: 110679811

Centisome position: 59.71

GC content: 57.66

Gene sequence:

>1044_bases
ATGGGACTATTCATACTCAGACGGTTGGGCGTGATGTTGCTGACGGCGCTCTGCCTCACCTTCATCGTGTTCTGGCTGAC
AAATCTCTACCCAAACCTTGAAAAGCTGGCAAAGACCCAAGGCAATTTCCGCATGTCGGATGAGGCTGTCACAAGTTATC
TGGACAAGAACGGCTACCTGCAGCCCCTGCCCGTCAAATTTGGCCAATGGCTGGGCGTCATGCCCGGCTGGATCCATGAA
GAAGACGGCACGATCACCGGGCGCTGCTTTGCCACGGACACACCCGAAGCGGAGCGCCCGACCTATTGCGGCGTGCTGCA
GGGGGACTGGGGGTTCTCAACCGTGTTCAAGGACGAGGTGGGCAGCATTGTCGCGACCCGGCTGGCGCTCACCGGCAAGC
TGATGTTCGCGGTGATGCTGGTGATGGTGCCCATGGCGCTGATTGTGGGGGTTCTGGCGGGGATGCGCGAAGGATCAAAG
CTCGACCGCTCCCTGTCGACGTTTTCCATCGCCTCGACCGCGACGCCGGAATATGTGTCGGGCGTGATCTTTATCGCGGT
TTTCGCCTCCTCCGCCTTTGGGCTGAAGTGGTTCAAAGGGTCGGCCACCTCCGCGATGGAGAACGCCACATTTGAGAATT
TCACCCTGCCGGTACTGACCATTTCCCTCTATGGCATGGGCTACATCGCACGGATGACGCGGGCGTCCATGACCGAGGTG
ATGACCGCGCAATACATCCGCACGGCCCGGCTCAAGGGTGTCAAGTTTTCCGACATTGTCTTGAAACACGCGTTGCGCAA
CGCGCTGATCGCGCCATTCACGGTGATCATGCTGCAGTTTCCCTGGCTGCTCAACGGCGTCGTGATCGTCGAAACCCTGT
TCAACTACAAGGGCTTCGGCTGGTTGTTGGTGCAGGCGGCATCCAACAATGACATTGAACTGTTGCTCGCCGTGTCTGTC
GTTTCTGTTTTCGTGGTTCTGGTCACGCAGTTGATATCCGATATCGGCTACGTCTACCTCAATCCACGCATTCGTATCAC
GTAA

Upstream 100 bases:

>100_bases
CCGGATTCATGCCTCACTGCGCAGGATTAACAAAAACGGGCAAATAACGGCCTGAAAACCGGTGCGGCCCACGCGCCACA
TCCTGACAACAGGGGTATTA

Downstream 100 bases:

>100_bases
GGGGGGCTGGTCATGGAAGAACTTTCCTGGGGCAGTATCATTGTCCGCATGGGCATACAGTTGATGCCCGTCTGGGTGTC
GCTGATCGCGCTCTTTACGA

Product: oligopeptide ABC transporter, permease protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MGLFILRRLGVMLLTALCLTFIVFWLTNLYPNLEKLAKTQGNFRMSDEAVTSYLDKNGYLQPLPVKFGQWLGVMPGWIHE
EDGTITGRCFATDTPEAERPTYCGVLQGDWGFSTVFKDEVGSIVATRLALTGKLMFAVMLVMVPMALIVGVLAGMREGSK
LDRSLSTFSIASTATPEYVSGVIFIAVFASSAFGLKWFKGSATSAMENATFENFTLPVLTISLYGMGYIARMTRASMTEV
MTAQYIRTARLKGVKFSDIVLKHALRNALIAPFTVIMLQFPWLLNGVVIVETLFNYKGFGWLLVQAASNNDIELLLAVSV
VSVFVVLVTQLISDIGYVYLNPRIRIT

Sequences:

>Translated_347_residues
MGLFILRRLGVMLLTALCLTFIVFWLTNLYPNLEKLAKTQGNFRMSDEAVTSYLDKNGYLQPLPVKFGQWLGVMPGWIHE
EDGTITGRCFATDTPEAERPTYCGVLQGDWGFSTVFKDEVGSIVATRLALTGKLMFAVMLVMVPMALIVGVLAGMREGSK
LDRSLSTFSIASTATPEYVSGVIFIAVFASSAFGLKWFKGSATSAMENATFENFTLPVLTISLYGMGYIARMTRASMTEV
MTAQYIRTARLKGVKFSDIVLKHALRNALIAPFTVIMLQFPWLLNGVVIVETLFNYKGFGWLLVQAASNNDIELLLAVSV
VSVFVVLVTQLISDIGYVYLNPRIRIT
>Mature_346_residues
GLFILRRLGVMLLTALCLTFIVFWLTNLYPNLEKLAKTQGNFRMSDEAVTSYLDKNGYLQPLPVKFGQWLGVMPGWIHEE
DGTITGRCFATDTPEAERPTYCGVLQGDWGFSTVFKDEVGSIVATRLALTGKLMFAVMLVMVPMALIVGVLAGMREGSKL
DRSLSTFSIASTATPEYVSGVIFIAVFASSAFGLKWFKGSATSAMENATFENFTLPVLTISLYGMGYIARMTRASMTEVM
TAQYIRTARLKGVKFSDIVLKHALRNALIAPFTVIMLQFPWLLNGVVIVETLFNYKGFGWLLVQAASNNDIELLLAVSVV
SVFVVLVTQLISDIGYVYLNPRIRIT

Specific function: Probably part of the binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=240, Percent_Identity=32.5, Blast_Score=122, Evalue=5e-29,
Organism=Escherichia coli, GI1787497, Length=240, Percent_Identity=29.5833333333333, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1789965, Length=365, Percent_Identity=26.5753424657534, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI1789888, Length=347, Percent_Identity=26.2247838616715, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1788504, Length=368, Percent_Identity=24.7282608695652, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1787761, Length=348, Percent_Identity=27.0114942528736, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787550, Length=137, Percent_Identity=29.9270072992701, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 38350; Mature: 38219

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLFILRRLGVMLLTALCLTFIVFWLTNLYPNLEKLAKTQGNFRMSDEAVTSYLDKNGYL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEECHHHHHHHHHCCCCC
QPLPVKFGQWLGVMPGWIHEEDGTITGRCFATDTPEAERPTYCGVLQGDWGFSTVFKDEV
CCCCHHHHHHHCCCCCCEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHH
GSIVATRLALTGKLMFAVMLVMVPMALIVGVLAGMREGSKLDRSLSTFSIASTATPEYVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEECCCCCHHHHH
GVIFIAVFASSAFGLKWFKGSATSAMENATFENFTLPVLTISLYGMGYIARMTRASMTEV
HHHHHHHHHCCCCCCEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MTAQYIRTARLKGVKFSDIVLKHALRNALIAPFTVIMLQFPWLLNGVVIVETLFNYKGFG
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCE
WLLVQAASNNDIELLLAVSVVSVFVVLVTQLISDIGYVYLNPRIRIT
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCEEEEC
>Mature Secondary Structure 
GLFILRRLGVMLLTALCLTFIVFWLTNLYPNLEKLAKTQGNFRMSDEAVTSYLDKNGYL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEECHHHHHHHHHCCCCC
QPLPVKFGQWLGVMPGWIHEEDGTITGRCFATDTPEAERPTYCGVLQGDWGFSTVFKDEV
CCCCHHHHHHHCCCCCCEECCCCCEEEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHH
GSIVATRLALTGKLMFAVMLVMVPMALIVGVLAGMREGSKLDRSLSTFSIASTATPEYVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHEECCCCCHHHHH
GVIFIAVFASSAFGLKWFKGSATSAMENATFENFTLPVLTISLYGMGYIARMTRASMTEV
HHHHHHHHHCCCCCCEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
MTAQYIRTARLKGVKFSDIVLKHALRNALIAPFTVIMLQFPWLLNGVVIVETLFNYKGFG
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCE
WLLVQAASNNDIELLLAVSVVSVFVVLVTQLISDIGYVYLNPRIRIT
EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424; 8796346 [H]