| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
Click here to switch to the map view.
The map label for this gene is glpX [H]
Identifier: 110679773
GI number: 110679773
Start: 2426748
End: 2427722
Strand: Reverse
Name: glpX [H]
Synonym: RD1_2537
Alternate gene names: 110679773
Gene position: 2427722-2426748 (Counterclockwise)
Preceding gene: 110679774
Following gene: 110679772
Centisome position: 58.74
GC content: 63.9
Gene sequence:
>975_bases ATGCCTGCCACCGCCGAATTTCACGACCGCATGTTGTCGCTGGGCCTCGCCCGCGTTTCCGAAGCAGCAGCGCTGGCCTC TGCCCGTCTGGTCGGTCACGGAGATGAGAAGGCCGCCGATCAGGCCGCCGTCAACGCCATGCGCGAACAGCTCAACATGC TGGACATTGCAGGAGTGGTCGTAATCGGTGAAGGCGAACGCGACGAGGCCCCGATGCTGTTCATCGGCGAAGAGGTCGGC ACCGGCAACGGACCCGGCGTCGATATCGCGCTGGACCCGCTGGAAGGGACAACCCTGACAGCCAAGGACATGCCAAACGC CCTGACGGTGATTGCAATGGGGCCGCGCGGCTCGATGCTGCATGCACCGGATGTGTATATGGACAAGCTGGCGATCGGGC CGGGTTTTGCGGAAAACGTCGTCACCCTTGATATGAGCCCCGCCGAACGTGTCGCAGCGCTCGCCGCCGCCAAGGGCTGT GCGGCATCCGATATCACGGTCTGCATCCTCGAACGCCCCCGCCACGAGGCCATGATCAGCGAAGTGCGCGCCACCGGCGC ATCGATCCGCCTGATCACCGACGGCGATGTGGCCGGTGTCATGCACTGCGCAGAACCCGACACCGGCATCGACATGTACA TGGGCGAAGGTGGCGCACCCGAAGGCGTGCTGGCCGCGGCGGCATTGAAATGCATGGGCGGCCAGATGTTCGGACGGTTG CTGTTTCGCAACGAGGACGAACGCGGACGCGCGGCCAAAGCGGGCATAACCGATCTCGACCGTGTCTATGCGCGTGATGA CATGGTGACCGAAGACGTCATCTTTGCCGCAACCGGGGTGACCGGCGGCAGCATCTTGGCCGGCGTGCACCGCGAACCGG GCTGGATGACAACCGAAACGCTGATCATGCGATCCAAGACCGGATCGGTGCGGCGCATGAACTACCGCACGCCTGTCTCA TCACCACAGGTTTGA
Upstream 100 bases:
>100_bases TATCGAAGACGTCTGACACGGACAGCATCATTGTTCTTATCCTCCGGGGCGGCTACAACGCGCCCCGACGCTCATTCTTC TGGACCAAAAGGAATTTGTA
Downstream 100 bases:
>100_bases GCCTCCCGTCGGGCGTGATTGCTGAGGCGTCGCCATGAGCTTTCTGGGCATAGAGCGCTCGCTGACCGGCAGGCGCTGGA TCGGACCCTCCGTCGAGATC
Product: fructose 1,6-bisphosphatase II
Products: NA
Alternate protein names: FBPase class 2; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 2 [H]
Number of amino acids: Translated: 324; Mature: 323
Protein sequence:
>324_residues MPATAEFHDRMLSLGLARVSEAAALASARLVGHGDEKAADQAAVNAMREQLNMLDIAGVVVIGEGERDEAPMLFIGEEVG TGNGPGVDIALDPLEGTTLTAKDMPNALTVIAMGPRGSMLHAPDVYMDKLAIGPGFAENVVTLDMSPAERVAALAAAKGC AASDITVCILERPRHEAMISEVRATGASIRLITDGDVAGVMHCAEPDTGIDMYMGEGGAPEGVLAAAALKCMGGQMFGRL LFRNEDERGRAAKAGITDLDRVYARDDMVTEDVIFAATGVTGGSILAGVHREPGWMTTETLIMRSKTGSVRRMNYRTPVS SPQV
Sequences:
>Translated_324_residues MPATAEFHDRMLSLGLARVSEAAALASARLVGHGDEKAADQAAVNAMREQLNMLDIAGVVVIGEGERDEAPMLFIGEEVG TGNGPGVDIALDPLEGTTLTAKDMPNALTVIAMGPRGSMLHAPDVYMDKLAIGPGFAENVVTLDMSPAERVAALAAAKGC AASDITVCILERPRHEAMISEVRATGASIRLITDGDVAGVMHCAEPDTGIDMYMGEGGAPEGVLAAAALKCMGGQMFGRL LFRNEDERGRAAKAGITDLDRVYARDDMVTEDVIFAATGVTGGSILAGVHREPGWMTTETLIMRSKTGSVRRMNYRTPVS SPQV >Mature_323_residues PATAEFHDRMLSLGLARVSEAAALASARLVGHGDEKAADQAAVNAMREQLNMLDIAGVVVIGEGERDEAPMLFIGEEVGT GNGPGVDIALDPLEGTTLTAKDMPNALTVIAMGPRGSMLHAPDVYMDKLAIGPGFAENVVTLDMSPAERVAALAAAKGCA ASDITVCILERPRHEAMISEVRATGASIRLITDGDVAGVMHCAEPDTGIDMYMGEGGAPEGVLAAAALKCMGGQMFGRLL FRNEDERGRAAKAGITDLDRVYARDDMVTEDVIFAATGVTGGSILAGVHREPGWMTTETLIMRSKTGSVRRMNYRTPVSS PQV
Specific function: Catalyzes the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate [H]
COG id: COG1494
COG function: function code G; Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the FBPase class 2 family [H]
Homologues:
Organism=Escherichia coli, GI1790360, Length=319, Percent_Identity=46.0815047021944, Blast_Score=261, Evalue=5e-71, Organism=Escherichia coli, GI1789298, Length=306, Percent_Identity=41.5032679738562, Blast_Score=208, Evalue=4e-55,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004464 [H]
Pfam domain/function: PF03320 FBPase_glpX [H]
EC number: =3.1.3.11 [H]
Molecular weight: Translated: 33968; Mature: 33837
Theoretical pI: Translated: 4.55; Mature: 4.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 6.2 %Met (Translated Protein) 7.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 5.9 %Met (Mature Protein) 7.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPATAEFHDRMLSLGLARVSEAAALASARLVGHGDEKAADQAAVNAMREQLNMLDIAGVV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEEEEEE VIGEGERDEAPMLFIGEEVGTGNGPGVDIALDPLEGTTLTAKDMPNALTVIAMGPRGSML EECCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEECCCCCCEEEEEEECCCCCEE HAPDVYMDKLAIGPGFAENVVTLDMSPAERVAALAAAKGCAASDITVCILERPRHEAMIS ECCCHHHHHEECCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHH EVRATGASIRLITDGDVAGVMHCAEPDTGIDMYMGEGGAPEGVLAAAALKCMGGQMFGRL HHHHCCCEEEEEECCCCEEEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHCHHHHHHH LFRNEDERGRAAKAGITDLDRVYARDDMVTEDVIFAATGVTGGSILAGVHREPGWMTTET HHCCCCCCCCHHHCCCCHHHHHHHCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCHHH LIMRSKTGSVRRMNYRTPVSSPQV EEEECCCCCEEEEEECCCCCCCCC >Mature Secondary Structure PATAEFHDRMLSLGLARVSEAAALASARLVGHGDEKAADQAAVNAMREQLNMLDIAGVV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEEEEEE VIGEGERDEAPMLFIGEEVGTGNGPGVDIALDPLEGTTLTAKDMPNALTVIAMGPRGSML EECCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEECCCCCCEEEEEEECCCCCEE HAPDVYMDKLAIGPGFAENVVTLDMSPAERVAALAAAKGCAASDITVCILERPRHEAMIS ECCCHHHHHEECCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHH EVRATGASIRLITDGDVAGVMHCAEPDTGIDMYMGEGGAPEGVLAAAALKCMGGQMFGRL HHHHCCCEEEEEECCCCEEEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHCHHHHHHH LFRNEDERGRAAKAGITDLDRVYARDDMVTEDVIFAATGVTGGSILAGVHREPGWMTTET HHCCCCCCCCHHHCCCCHHHHHHHCCCCCCCCEEEEECCCCCCCEEEECCCCCCCCCHHH LIMRSKTGSVRRMNYRTPVSSPQV EEEECCCCCEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]