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The map label for this gene is potD [C]

Identifier: 110679674

GI number: 110679674

Start: 2314935

End: 2315966

Strand: Direct

Name: potD [C]

Synonym: RD1_2428

Alternate gene names: 110679674

Gene position: 2314935-2315966 (Clockwise)

Preceding gene: 110679673

Following gene: 110679675

Centisome position: 56.01

GC content: 59.59

Gene sequence:

>1032_bases
ATGAATGACCTTTCCCGCCGAAGACTCTTGCAAAGCGCCGCCGCGTTCGGCGCAGCCTCAGCCTTGCCGTTCTCGGCTGC
GCGTGCTGCGGACTCTCTGGCAGCCGCCATCTATCCAGGAACCTGGGACGAGGCCTACCGGTCCGTCGTCGCCCCCTTGC
TTGCGCAAAAGCATGGCGTGGATGTGGCTTTTGATCCGCTGTGGGCCGTGGATCAGGTCACCAAGGCACGCGCCGGGCGC
GGTATTGCGCCGTTTGACTGTTTTGTCCTCGACCCCGGACCCACGGCTGCGGCGAGAGAGGCCGATCTTTTCGAGCCGAT
TGACGCCTCTATGCTGTCCAATGCGGCAAACCTGCCCGATGGGATGATCTCGGCGGATGCGGCGACCGTCAATGTGCAGG
TTGTTGGCCTGTGCTATAACCCGACCGCCTTCCCCGAGCCGCCAACCCGTTGGGAGCAGATATTCGAGTCTCCTTATGTC
GAACGGCTTGGCCTCACGGGGTTCCAGACCACATTCGGTACGGTGTCCCTGATCGAGATGGCAAAGGTCTTTGGCGGGTC
CGACACGGATATGGAGCCGATCTTTGCAAAACTGCAGGAAGCGCTTCCCAAGGTTGCAGCCGTCACCGGGCCCGCCGGGT
TGCCCGGCCTGTTCCAGCAGGGTCAGATCGATCTGATGTATACCAACACCAACAACGTCGCGACGCTCAAGGCGCAGGGT
GTGGACATCGAATTCATCGCGCCTGAAACCGGGGCCATCACATTCTCGACGTCTCTTCACATCACGAAGGGGTCCGAGAA
CGTCGAAGCCGCGCACAAATACATCGACACGGCGATCTCGGCTGAAGCCCAGTCGCAATTGCAGCTGTCCCCCTACAACA
TGATCCCGGTGAACAAGCAGGTCGAACTGGCAGAGACCCTTTACATCAAATCCGTGGATGAGTTGTCGGATATGGTTGTG
CACGATTGGAGCGTGATCAATCCGCAGCGTGCGGGGTGGATTGAGCGGTTCAACAAAGAGATCACCAAGTAA

Upstream 100 bases:

>100_bases
CGAGCCACTGCGCGCTGGCTGAGACGGCCGCCCCGATCCTCTTTCCCAAGCCCAAATGAAAACAACCATAAAACACCCAA
ATCCAACAAAGGAGACCACC

Downstream 100 bases:

>100_bases
TCATGGCTGGTGCCGCAACATATGAACCCGGACGTGTGGACTGGCGGCTCGCAGCGCCGCTCGGTCTGACGTATCTGGCG
TTTTTTGCGGCACCGCTCCT

Product: ABC transporter, substrate-binding protein, putative

Products: phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: Twin-Arginine Translocation Pathway Signal

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MNDLSRRRLLQSAAAFGAASALPFSAARAADSLAAAIYPGTWDEAYRSVVAPLLAQKHGVDVAFDPLWAVDQVTKARAGR
GIAPFDCFVLDPGPTAAAREADLFEPIDASMLSNAANLPDGMISADAATVNVQVVGLCYNPTAFPEPPTRWEQIFESPYV
ERLGLTGFQTTFGTVSLIEMAKVFGGSDTDMEPIFAKLQEALPKVAAVTGPAGLPGLFQQGQIDLMYTNTNNVATLKAQG
VDIEFIAPETGAITFSTSLHITKGSENVEAAHKYIDTAISAEAQSQLQLSPYNMIPVNKQVELAETLYIKSVDELSDMVV
HDWSVINPQRAGWIERFNKEITK

Sequences:

>Translated_343_residues
MNDLSRRRLLQSAAAFGAASALPFSAARAADSLAAAIYPGTWDEAYRSVVAPLLAQKHGVDVAFDPLWAVDQVTKARAGR
GIAPFDCFVLDPGPTAAAREADLFEPIDASMLSNAANLPDGMISADAATVNVQVVGLCYNPTAFPEPPTRWEQIFESPYV
ERLGLTGFQTTFGTVSLIEMAKVFGGSDTDMEPIFAKLQEALPKVAAVTGPAGLPGLFQQGQIDLMYTNTNNVATLKAQG
VDIEFIAPETGAITFSTSLHITKGSENVEAAHKYIDTAISAEAQSQLQLSPYNMIPVNKQVELAETLYIKSVDELSDMVV
HDWSVINPQRAGWIERFNKEITK
>Mature_343_residues
MNDLSRRRLLQSAAAFGAASALPFSAARAADSLAAAIYPGTWDEAYRSVVAPLLAQKHGVDVAFDPLWAVDQVTKARAGR
GIAPFDCFVLDPGPTAAAREADLFEPIDASMLSNAANLPDGMISADAATVNVQVVGLCYNPTAFPEPPTRWEQIFESPYV
ERLGLTGFQTTFGTVSLIEMAKVFGGSDTDMEPIFAKLQEALPKVAAVTGPAGLPGLFQQGQIDLMYTNTNNVATLKAQG
VDIEFIAPETGAITFSTSLHITKGSENVEAAHKYIDTAISAEAQSQLQLSPYNMIPVNKQVELAETLYIKSVDELSDMVV
HDWSVINPQRAGWIERFNKEITK

Specific function: Required For The Activity Of The Bacterial Periplasmic Transport System Of Putrescine And Spermidine. Polyamine Binding Protein. [C]

COG id: COG0687

COG function: function code E; Spermidine/putrescine-binding periplasmic protein

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 1040 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 260 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 460 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Stationary Phase,

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36911; Mature: 36911

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDLSRRRLLQSAAAFGAASALPFSAARAADSLAAAIYPGTWDEAYRSVVAPLLAQKHGV
CCHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHCCC
DVAFDPLWAVDQVTKARAGRGIAPFDCFVLDPGPTAAAREADLFEPIDASMLSNAANLPD
CEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCC
GMISADAATVNVQVVGLCYNPTAFPEPPTRWEQIFESPYVERLGLTGFQTTFGTVSLIEM
CCEECCCEEEEEEEEEEEECCCCCCCCCHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHH
AKVFGGSDTDMEPIFAKLQEALPKVAAVTGPAGLPGLFQQGQIDLMYTNTNNVATLKAQG
HHHHCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCEEEEEECCCCEEEEEECC
VDIEFIAPETGAITFSTSLHITKGSENVEAAHKYIDTAISAEAQSQLQLSPYNMIPVNKQ
CEEEEECCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCEEECCCEEECCCCC
VELAETLYIKSVDELSDMVVHDWSVINPQRAGWIERFNKEITK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNDLSRRRLLQSAAAFGAASALPFSAARAADSLAAAIYPGTWDEAYRSVVAPLLAQKHGV
CCHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHCCC
DVAFDPLWAVDQVTKARAGRGIAPFDCFVLDPGPTAAAREADLFEPIDASMLSNAANLPD
CEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCC
GMISADAATVNVQVVGLCYNPTAFPEPPTRWEQIFESPYVERLGLTGFQTTFGTVSLIEM
CCEECCCEEEEEEEEEEEECCCCCCCCCHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHH
AKVFGGSDTDMEPIFAKLQEALPKVAAVTGPAGLPGLFQQGQIDLMYTNTNNVATLKAQG
HHHHCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCEEEEEECCCCEEEEEECC
VDIEFIAPETGAITFSTSLHITKGSENVEAAHKYIDTAISAEAQSQLQLSPYNMIPVNKQ
CEEEEECCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCEEECCCEEECCCCC
VELAETLYIKSVDELSDMVVHDWSVINPQRAGWIERFNKEITK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA