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The map label for this gene is yagI [H]

Identifier: 110679628

GI number: 110679628

Start: 2268454

End: 2269278

Strand: Reverse

Name: yagI [H]

Synonym: RD1_2379

Alternate gene names: 110679628

Gene position: 2269278-2268454 (Counterclockwise)

Preceding gene: 110679629

Following gene: 110679627

Centisome position: 54.91

GC content: 59.64

Gene sequence:

>825_bases
TTGCATCTGGACCGCCTGATCACAATTCTGGAACTCATCGCCATGGCAGGCCGTGGCCTCTCGGCGGTGGAGGTGCAGAA
AGCGACCGGGCTGCCGAGGCCCACATGTTACCGCCTGTTGCAGACCCTCGCTGAAAACAGGTTGATCGACGATCCCGGCG
GGTCATCGCGCTATGTGATCGGTGAGCGTTTGATCGGGATCGCGCTGCTGGGGCAATCCGACATCGACGTCCGGCGCGTC
TGCGCACCGGTGCTGCGCGAAGCCGCGTTGAACCTCGAAGACAGCGTGTTTCTTGCCCGGTTGCGCAGCACGGATGTTGA
AATCATCCACGTCGAAACCCCGAGCAATTCCACACACGGTTTCATCCATCCCGGGTTCGGCGTCCGCCCGATGCACGCCT
GCTCCTGCTCCAAGGCGATTGCGGCCTTTGCCAAGCAGAGTTTTCAGGAAAACATACTCTCGGGTATGCTCAACCCCTAC
ACGCCGCACACAAAAACCACCCGCGCAGCCCTTGAAGCAGAGTTCGCCGCGATCGTGCAGCAAGGCTATGCGGAGTGTCA
CGAGGAAATCGACATCGGTGTTTCCAGCGTCGCGGCCCCCGTTTTTGTGGGCGCGACCGGCACGACATTCAGCGTGGGCG
CGGTCGGCCCTGTGCGCCGCTTCACAAAGCAATACCGCAAGAGGTTGGGCGAAGACCTTATCGCCATTTCTGCAAAACTC
GGTGCCGCAATCCAGCTTTGCGCTGTGTCTCAGGACCGGATTGCAGACATGCCAAGACCAACAGAACCACAACAGAAGGC
AAAACAACTGCCAAACCACCACTAA

Upstream 100 bases:

>100_bases
ATACCGCGTCATGGCCCAAATCCGCGGGACGTTGAAAAAGCTATCCATACGCTCAAGAATGTTCATATAATGAGACAGAA
TCACATTTTGCGAGACACTG

Downstream 100 bases:

>100_bases
GGGAGCGAGACCATGACAGAGACAAACGGAAGCTGCTGCGCAGGCCCGGGCTATGCATCACCAGAGGAAGCCATCAAGGC
GCCGCGCGAAAAGGTCGTCT

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MHLDRLITILELIAMAGRGLSAVEVQKATGLPRPTCYRLLQTLAENRLIDDPGGSSRYVIGERLIGIALLGQSDIDVRRV
CAPVLREAALNLEDSVFLARLRSTDVEIIHVETPSNSTHGFIHPGFGVRPMHACSCSKAIAAFAKQSFQENILSGMLNPY
TPHTKTTRAALEAEFAAIVQQGYAECHEEIDIGVSSVAAPVFVGATGTTFSVGAVGPVRRFTKQYRKRLGEDLIAISAKL
GAAIQLCAVSQDRIADMPRPTEPQQKAKQLPNHH

Sequences:

>Translated_274_residues
MHLDRLITILELIAMAGRGLSAVEVQKATGLPRPTCYRLLQTLAENRLIDDPGGSSRYVIGERLIGIALLGQSDIDVRRV
CAPVLREAALNLEDSVFLARLRSTDVEIIHVETPSNSTHGFIHPGFGVRPMHACSCSKAIAAFAKQSFQENILSGMLNPY
TPHTKTTRAALEAEFAAIVQQGYAECHEEIDIGVSSVAAPVFVGATGTTFSVGAVGPVRRFTKQYRKRLGEDLIAISAKL
GAAIQLCAVSQDRIADMPRPTEPQQKAKQLPNHH
>Mature_274_residues
MHLDRLITILELIAMAGRGLSAVEVQKATGLPRPTCYRLLQTLAENRLIDDPGGSSRYVIGERLIGIALLGQSDIDVRRV
CAPVLREAALNLEDSVFLARLRSTDVEIIHVETPSNSTHGFIHPGFGVRPMHACSCSKAIAAFAKQSFQENILSGMLNPY
TPHTKTTRAALEAEFAAIVQQGYAECHEEIDIGVSSVAAPVFVGATGTTFSVGAVGPVRRFTKQYRKRLGEDLIAISAKL
GAAIQLCAVSQDRIADMPRPTEPQQKAKQLPNHH

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=202, Percent_Identity=27.2277227722772, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI87082359, Length=238, Percent_Identity=26.0504201680672, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788581, Length=238, Percent_Identity=27.7310924369748, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 29687; Mature: 29687

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLDRLITILELIAMAGRGLSAVEVQKATGLPRPTCYRLLQTLAENRLIDDPGGSSRYVI
CCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEH
GERLIGIALLGQSDIDVRRVCAPVLREAALNLEDSVFLARLRSTDVEIIHVETPSNSTHG
HHHHHHHHEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEEECCCCCCCC
FIHPGFGVRPMHACSCSKAIAAFAKQSFQENILSGMLNPYTPHTKTTRAALEAEFAAIVQ
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
QGYAECHEEIDIGVSSVAAPVFVGATGTTFSVGAVGPVRRFTKQYRKRLGEDLIAISAKL
HHHHHHHHHHHCCHHHHHHHHEECCCCCEEECCCCHHHHHHHHHHHHHHCHHHHHHHHHH
GAAIQLCAVSQDRIADMPRPTEPQQKAKQLPNHH
HHHHHHHHCCHHHHHCCCCCCCHHHHHHCCCCCC
>Mature Secondary Structure
MHLDRLITILELIAMAGRGLSAVEVQKATGLPRPTCYRLLQTLAENRLIDDPGGSSRYVI
CCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEH
GERLIGIALLGQSDIDVRRVCAPVLREAALNLEDSVFLARLRSTDVEIIHVETPSNSTHG
HHHHHHHHEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEEECCCCCCCC
FIHPGFGVRPMHACSCSKAIAAFAKQSFQENILSGMLNPYTPHTKTTRAALEAEFAAIVQ
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
QGYAECHEEIDIGVSSVAAPVFVGATGTTFSVGAVGPVRRFTKQYRKRLGEDLIAISAKL
HHHHHHHHHHHCCHHHHHHHHEECCCCCEEECCCCHHHHHHHHHHHHHHCHHHHHHHHHH
GAAIQLCAVSQDRIADMPRPTEPQQKAKQLPNHH
HHHHHHHHCCHHHHHCCCCCCCHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]