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The map label for this gene is dgdR [H]

Identifier: 110679622

GI number: 110679622

Start: 2263256

End: 2264149

Strand: Reverse

Name: dgdR [H]

Synonym: RD1_2370

Alternate gene names: 110679622

Gene position: 2264149-2263256 (Counterclockwise)

Preceding gene: 110679624

Following gene: 110679621

Centisome position: 54.78

GC content: 59.51

Gene sequence:

>894_bases
GTGGCGCACATGGGTCCCATCAACCTTCCGACAGAGCTTTTGCGCGCGTTCATCACCGTTGTGGAAGTTGCAAGTTTCAC
CCGTGCCGCGGAAATACTGGGGCGCACGCAGCCTGCAATCAGCCTGCAGGTCAAACGGCTGGAGGAGTCGGTCGGCTGCA
CGCTGATCGAGCGCAAAGGCAAGGAAATATCCCTCACCGAACGGGGCGAGGCGCTGGCGATCCATGCCCGGCAAATCCTG
CGGCTGAATGATCTGGCAATGGCGCAGTTTGAACGGCCAAACCCTCTGGCCAAGCTGCGTGTGGGCCTGCCGGTGGATTA
TGCGGTCAACACGCTGCAATCCTGCCTGACCGATGTCGTCAAACAATACAGCGACATCCAGATCGAAATTCGCTGCGATC
TGTCCAAACATCTGCTGTCGGCCATGCGCAGCAATGACATTGACATCGCGGTGGCCCTGTTTGACGGAGATGATCAGCAA
TTCCTGTTCCGCAATTGGAAGGAACAGCCCACATGGGTCGGGGCCACGGATTTTGAAATCTGCGATCAGGCCGATATCCC
GCTGGTCGTGCACCCCTATGGCTGCGTCTACCGGGACCGGATGGCGACCGCATTGAAACTGGCGGGAAAAAGCTGGCGCA
TCGCGTATTCAAGCCCGGGCATTGGCGGCCTTCAACGCGCGGTTCAGGATGGGCTCGGCCTGTCTTGTCTGACCGCGCCC
ACGGTTCAAAGCGGTATGCGCAAATTCACGGAACAAGATGGCCTGCCCGTCCTGCCGCCCCTGCACATCGGCTTGTTTGC
GCGGCAAACACAGTTGGGCGCGGGCGGATATGCGGCGATTGATGCGATGGTCACAACGCTGGAAGCGCATGCATCGGGCA
CGCAATCCGGATAA

Upstream 100 bases:

>100_bases
GCGACGGGCGTTTCGCAAGATACCCGATCACGGGGTCGGGAACGGGCGAGCGGATATTCAAAAGCTTAATGGCTTCTCAA
TTTGAATTTCCACCGTTAAT

Downstream 100 bases:

>100_bases
GCGCTCATTATGCAAGCATATCAACGATAAATTTCACAAAATCTGCATTTTACAATAGCATTCTTTCAAACACCGACCGA
ACCTGAAGTTCGGCAAGACA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MAHMGPINLPTELLRAFITVVEVASFTRAAEILGRTQPAISLQVKRLEESVGCTLIERKGKEISLTERGEALAIHARQIL
RLNDLAMAQFERPNPLAKLRVGLPVDYAVNTLQSCLTDVVKQYSDIQIEIRCDLSKHLLSAMRSNDIDIAVALFDGDDQQ
FLFRNWKEQPTWVGATDFEICDQADIPLVVHPYGCVYRDRMATALKLAGKSWRIAYSSPGIGGLQRAVQDGLGLSCLTAP
TVQSGMRKFTEQDGLPVLPPLHIGLFARQTQLGAGGYAAIDAMVTTLEAHASGTQSG

Sequences:

>Translated_297_residues
MAHMGPINLPTELLRAFITVVEVASFTRAAEILGRTQPAISLQVKRLEESVGCTLIERKGKEISLTERGEALAIHARQIL
RLNDLAMAQFERPNPLAKLRVGLPVDYAVNTLQSCLTDVVKQYSDIQIEIRCDLSKHLLSAMRSNDIDIAVALFDGDDQQ
FLFRNWKEQPTWVGATDFEICDQADIPLVVHPYGCVYRDRMATALKLAGKSWRIAYSSPGIGGLQRAVQDGLGLSCLTAP
TVQSGMRKFTEQDGLPVLPPLHIGLFARQTQLGAGGYAAIDAMVTTLEAHASGTQSG
>Mature_296_residues
AHMGPINLPTELLRAFITVVEVASFTRAAEILGRTQPAISLQVKRLEESVGCTLIERKGKEISLTERGEALAIHARQILR
LNDLAMAQFERPNPLAKLRVGLPVDYAVNTLQSCLTDVVKQYSDIQIEIRCDLSKHLLSAMRSNDIDIAVALFDGDDQQF
LFRNWKEQPTWVGATDFEICDQADIPLVVHPYGCVYRDRMATALKLAGKSWRIAYSSPGIGGLQRAVQDGLGLSCLTAPT
VQSGMRKFTEQDGLPVLPPLHIGLFARQTQLGAGGYAAIDAMVTTLEAHASGTQSG

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=254, Percent_Identity=31.496062992126, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1788748, Length=152, Percent_Identity=26.9736842105263, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786401, Length=145, Percent_Identity=29.6551724137931, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32457; Mature: 32326

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHMGPINLPTELLRAFITVVEVASFTRAAEILGRTQPAISLQVKRLEESVGCTLIERKG
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCEEEEECCC
KEISLTERGEALAIHARQILRLNDLAMAQFERPNPLAKLRVGLPVDYAVNTLQSCLTDVV
CEEEEECCCCEEEEHHHHHHHHHHHHHHHCCCCCCHHEEEECCCHHHHHHHHHHHHHHHH
KQYSDIQIEIRCDLSKHLLSAMRSNDIDIAVALFDGDDQQFLFRNWKEQPTWVGATDFEI
HHHCCEEEEEEECHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHCCCCCCCEECCCCHHH
CDQADIPLVVHPYGCVYRDRMATALKLAGKSWRIAYSSPGIGGLQRAVQDGLGLSCLTAP
CCCCCCCEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCEEEECCH
TVQSGMRKFTEQDGLPVLPPLHIGLFARQTQLGAGGYAAIDAMVTTLEAHASGTQSG
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AHMGPINLPTELLRAFITVVEVASFTRAAEILGRTQPAISLQVKRLEESVGCTLIERKG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCEEEEECCC
KEISLTERGEALAIHARQILRLNDLAMAQFERPNPLAKLRVGLPVDYAVNTLQSCLTDVV
CEEEEECCCCEEEEHHHHHHHHHHHHHHHCCCCCCHHEEEECCCHHHHHHHHHHHHHHHH
KQYSDIQIEIRCDLSKHLLSAMRSNDIDIAVALFDGDDQQFLFRNWKEQPTWVGATDFEI
HHHCCEEEEEEECHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHCCCCCCCEECCCCHHH
CDQADIPLVVHPYGCVYRDRMATALKLAGKSWRIAYSSPGIGGLQRAVQDGLGLSCLTAP
CCCCCCCEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCEEEECCH
TVQSGMRKFTEQDGLPVLPPLHIGLFARQTQLGAGGYAAIDAMVTTLEAHASGTQSG
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]