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The map label for this gene is potC [H]

Identifier: 110679619

GI number: 110679619

Start: 2260237

End: 2261037

Strand: Reverse

Name: potC [H]

Synonym: RD1_2367

Alternate gene names: 110679619

Gene position: 2261037-2260237 (Counterclockwise)

Preceding gene: 110679620

Following gene: 110679618

Centisome position: 54.71

GC content: 54.18

Gene sequence:

>801_bases
ATGAAACAAAGCCGGTCCCTGAACTTTGCCCTCGCCCTTTATGTCGCGCTGATCTTTGTCTTCGTTTTCGCGCCGATCGT
GTTCAGCATGATCTTCTCCTTCAACTCGCAACGGTTTCCGACCATCCCGCTGGGCGAATTCACCACCGAGTGGTACGCAA
AAATCCTTGCGGACCCTGATGTCTGGGAGGCCGCGCTGAACAGCCTGATCGTGTCTTGTTCAACAGCGGTCATCGCAACC
TTTCTGGGGTTTAGCACGGCCTATTCCGATTTCCGCTATGGTTTCCGGTTCAAAGGCCCCTATCTGGCGCTGATCCTGTT
GCCGCCGACCATTCCGTTGATCATCATGGCGCTGGCGATGCTTGCGTGGTTTTCCAAGATCGGCATGTCCGGGCAGCTTT
ATTCGATCATTATCGCCCATAGCGTTCTGACAGCGCCTTTTGCCATGGCCGTGATCCGGCTGCGCCTCAACCAGATGGAC
CCTGATCTTGAAGCCGCCGCGTGGAATCTCGGCGGTTCAGAATGGCAGACCATGCGTCACGTCATCGTGCCTTTCTGCAA
ACCTGCGATCTTTTCCAGTCTCTTTCTGACGGCTGCGGTTTCCTTTGATGAATTTGCCGTCTCGTGGTTCGTTTCGGGTC
TGAACAAGACACTGCCCGTTGTCGTGCTCGAAATCGTTCAGGGCAACATTGACCCGCAGGTCAACGCCATCGGCACATTT
GTTTTCCTTATCTCAATGACCCTTGTTGTGCTGGCGCAGTTGTTTTTCGCCAGCCGCCAAATGAAGAGCACTCAATCATG
A

Upstream 100 bases:

>100_bases
GGCCCCGCGCCGCTGTGGTCGCCATCATGATGATGCTCACGTTGTTCGCCATTGCCTTCACCGGCATCGCCTTGGCCTAC
CGCAAGGGAAAGGGCGCGAA

Downstream 100 bases:

>100_bases
ACAAGCCACTGGTTGTCTTTGACAAAGTACAAAAACACTTCGGCAATTTCGTCGCCGTGAAGGAACTGGATTTCGAAATC
CGCGAGGGTGAGTTTCTGGC

Product: spermidine/putrescine transport system, permease protein

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MKQSRSLNFALALYVALIFVFVFAPIVFSMIFSFNSQRFPTIPLGEFTTEWYAKILADPDVWEAALNSLIVSCSTAVIAT
FLGFSTAYSDFRYGFRFKGPYLALILLPPTIPLIIMALAMLAWFSKIGMSGQLYSIIIAHSVLTAPFAMAVIRLRLNQMD
PDLEAAAWNLGGSEWQTMRHVIVPFCKPAIFSSLFLTAAVSFDEFAVSWFVSGLNKTLPVVVLEIVQGNIDPQVNAIGTF
VFLISMTLVVLAQLFFASRQMKSTQS

Sequences:

>Translated_266_residues
MKQSRSLNFALALYVALIFVFVFAPIVFSMIFSFNSQRFPTIPLGEFTTEWYAKILADPDVWEAALNSLIVSCSTAVIAT
FLGFSTAYSDFRYGFRFKGPYLALILLPPTIPLIIMALAMLAWFSKIGMSGQLYSIIIAHSVLTAPFAMAVIRLRLNQMD
PDLEAAAWNLGGSEWQTMRHVIVPFCKPAIFSSLFLTAAVSFDEFAVSWFVSGLNKTLPVVVLEIVQGNIDPQVNAIGTF
VFLISMTLVVLAQLFFASRQMKSTQS
>Mature_266_residues
MKQSRSLNFALALYVALIFVFVFAPIVFSMIFSFNSQRFPTIPLGEFTTEWYAKILADPDVWEAALNSLIVSCSTAVIAT
FLGFSTAYSDFRYGFRFKGPYLALILLPPTIPLIIMALAMLAWFSKIGMSGQLYSIIIAHSVLTAPFAMAVIRLRLNQMD
PDLEAAAWNLGGSEWQTMRHVIVPFCKPAIFSSLFLTAAVSFDEFAVSWFVSGLNKTLPVVVLEIVQGNIDPQVNAIGTF
VFLISMTLVVLAQLFFASRQMKSTQS

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=234, Percent_Identity=32.0512820512821, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1787081, Length=239, Percent_Identity=30.1255230125523, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787714, Length=248, Percent_Identity=28.2258064516129, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29516; Mature: 29516

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQSRSLNFALALYVALIFVFVFAPIVFSMIFSFNSQRFPTIPLGEFTTEWYAKILADPD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCH
VWEAALNSLIVSCSTAVIATFLGFSTAYSDFRYGFRFKGPYLALILLPPTIPLIIMALAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCEEEEEEECCHHHHHHHHHHH
LAWFSKIGMSGQLYSIIIAHSVLTAPFAMAVIRLRLNQMDPDLEAAAWNLGGSEWQTMRH
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHH
VIVPFCKPAIFSSLFLTAAVSFDEFAVSWFVSGLNKTLPVVVLEIVQGNIDPQVNAIGTF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHH
VFLISMTLVVLAQLFFASRQMKSTQS
HHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKQSRSLNFALALYVALIFVFVFAPIVFSMIFSFNSQRFPTIPLGEFTTEWYAKILADPD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCH
VWEAALNSLIVSCSTAVIATFLGFSTAYSDFRYGFRFKGPYLALILLPPTIPLIIMALAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCEEEEEEECCHHHHHHHHHHH
LAWFSKIGMSGQLYSIIIAHSVLTAPFAMAVIRLRLNQMDPDLEAAAWNLGGSEWQTMRH
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHH
VIVPFCKPAIFSSLFLTAAVSFDEFAVSWFVSGLNKTLPVVVLEIVQGNIDPQVNAIGTF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHH
VFLISMTLVVLAQLFFASRQMKSTQS
HHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]