| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is trgA
Identifier: 110679557
GI number: 110679557
Start: 2192635
End: 2193075
Strand: Direct
Name: trgA
Synonym: RD1_2297
Alternate gene names: NA
Gene position: 2192635-2193075 (Clockwise)
Preceding gene: 110679556
Following gene: 110679558
Centisome position: 53.05
GC content: 60.54
Gene sequence:
>441_bases ATGCCCGACGCCGCCAGATTGATCGCCGCCCTCTGCATCGGCGCGCTTGCCTATGTTGTATCGCTGCAGATCAAGCCGCT GATGCCGGAAAGCACGGCCTTTGGATCATTCGCCTATATCAACGCGATACTGGGTATCGTCTGCGGCTGGACAGTGATGG GCAAACGCGCTGGCCGGGGTGTGGCAGCAGCGATCAACAACGGCTTGAGCGGCGCGTTGGTGCTGGTCATCTGGGGCCTG CTGCTGCACGCCAGTTATCAGATGTTCGACCGCGCGATGGACAATTGGTACAACGGTTTCTTCGCGGCGATGGCAGCGAT CTTCCAGTTCATGGCGGAATACGCGCTGGTGATGGTGAACCCGCTGGTGATGTTCTCCCTGATGGCGGGCGGGGTTCTGG CGGGGCTTGCAACGGAATACGCTTGGCGCATGTGGCGATAG
Upstream 100 bases:
>100_bases TGTGCCTTAGTTTTTACACGCCTCAGTGATAGACCCGAACCACCCTCGGCTTCATGAACAGTCGGGGGAGAGGTTCGTTT GCCAGTATCCGAGGTTCGCA
Downstream 100 bases:
>100_bases CCGTTAACAGTCGGGCATGAGACCACTTTTCCTGTTCGGAACACTGCAATATCGACCGCTGCTGGATGCAGTATTGGGGC GCAACAATGATGTGGCGATG
Product: tellurite resistance protein TrgA
Products: NA
Alternate protein names: Tellurite Resistance Protein TrgA
Number of amino acids: Translated: 146; Mature: 145
Protein sequence:
>146_residues MPDAARLIAALCIGALAYVVSLQIKPLMPESTAFGSFAYINAILGIVCGWTVMGKRAGRGVAAAINNGLSGALVLVIWGL LLHASYQMFDRAMDNWYNGFFAAMAAIFQFMAEYALVMVNPLVMFSLMAGGVLAGLATEYAWRMWR
Sequences:
>Translated_146_residues MPDAARLIAALCIGALAYVVSLQIKPLMPESTAFGSFAYINAILGIVCGWTVMGKRAGRGVAAAINNGLSGALVLVIWGL LLHASYQMFDRAMDNWYNGFFAAMAAIFQFMAEYALVMVNPLVMFSLMAGGVLAGLATEYAWRMWR >Mature_145_residues PDAARLIAALCIGALAYVVSLQIKPLMPESTAFGSFAYINAILGIVCGWTVMGKRAGRGVAAAINNGLSGALVLVIWGLL LHASYQMFDRAMDNWYNGFFAAMAAIFQFMAEYALVMVNPLVMFSLMAGGVLAGLATEYAWRMWR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15781; Mature: 15650
Theoretical pI: Translated: 8.69; Mature: 8.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 7.5 %Met (Translated Protein) 8.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 6.9 %Met (Mature Protein) 8.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDAARLIAALCIGALAYVVSLQIKPLMPESTAFGSFAYINAILGIVCGWTVMGKRAGRG CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH VAAAINNGLSGALVLVIWGLLLHASYQMFDRAMDNWYNGFFAAMAAIFQFMAEYALVMVN HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PLVMFSLMAGGVLAGLATEYAWRMWR HHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PDAARLIAALCIGALAYVVSLQIKPLMPESTAFGSFAYINAILGIVCGWTVMGKRAGRG CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH VAAAINNGLSGALVLVIWGLLLHASYQMFDRAMDNWYNGFFAAMAAIFQFMAEYALVMVN HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PLVMFSLMAGGVLAGLATEYAWRMWR HHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA