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The map label for this gene is dppB [H]

Identifier: 110679495

GI number: 110679495

Start: 2125476

End: 2126456

Strand: Reverse

Name: dppB [H]

Synonym: RD1_2224

Alternate gene names: 110679495

Gene position: 2126456-2125476 (Counterclockwise)

Preceding gene: 110679496

Following gene: 110679494

Centisome position: 51.45

GC content: 58.82

Gene sequence:

>981_bases
ATGCTTGCCTTTATCATCCGGCGTGTCCTGCAATCCGCGCTTGTCCTGCTGATCGTGGGGCTGACGGCGTTTTCCATGTT
TCGCTTTATCGGCGATCCGATTGACAACATGCTCGGACAGGAACGCACGGCGATGGATATCGAACGGCTGCGTGAGCAGT
TGGGGCTCGATCAGTCCTTTCCCGTTCAATATTACAGGTTCCTGCAGGAGGCGGTGCAGGGGAATTTTGGTGTCAGCTAT
CGTCAGGGACGGCCCGTGGCGGAAATCCTGCTCGAACGTGCGCCCGCCACGCTGGAGCTGGCCGCCGTGTCGGGCATCCT
TGCCATTGCCTTTGGCATCGCATTTGGAGTGTTCACGGCGATCCGGCGCAACGGGTTCACGGCCAATTTCATCATGTCCG
CCTCTCTGATCGGTGTGTCCCTGCCGACGTTCCTGATCGGGATCCTGCTGATCTATATCTTTTCTGTTGAACTCGGCTGG
CTGCCCAGTTTCGGGCGCGGCGAGGTCGTGCAGATCGGCAATTGGTCCACGGGGCTGCTCACCAGTTCCGGCCTCAAGGC
GCTGATCCTGCCCTCGATCACGCTGGGTCTTTATCAGATGACGCTGATCATGCGGCTGGTACGATCCGAGATGCTGGAGG
TGCTGCGCCAGGACTACATCCGCTTTGCCCGCGCGCGGGGCCTGCGCGACCGGGCGATCCATTTCCGCCATGCGCTTAAA
AATACGATGGTGCCGGTGATCACCGTGATCGGCCTGCAGCTTGGCGCGATCATCGCCTTTGCCATCATTACCGAAACGGT
GTTCCAATGGCCGGGCGTCGGTTTGCTCTTCATCAACGCTGTGCAATTTGTCGATATCCCCGTCATGGCCGCGTACCTCA
TGCTGATTTCGGTCATGTTCGTGGCCATCAACCTGATCGTGGATATCCTTTATTTCTTTATCGACCCGCGCCTGCGGGTT
GACCGTGCGGGAGGGCACTGA

Upstream 100 bases:

>100_bases
TGCAACGGCCCGACAACTTCTTTATTCTGCGCTGGGTTAGCCTTAACTAGGAACATCTGCGGGGCGTTCAGGCCCTGCGG
CAACGGGGATAGTCACCATC

Downstream 100 bases:

>100_bases
TGACGGATTTGCCAGTAAAGGCGGCAGAGCAATCGCGCTTGCGGGTTTTTCTCGACAGCGACGTTTTCTACATGTTCAGG
AAATCGCCTGTCGCCGTGGT

Product: peptide ABC transporter, permease protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MLAFIIRRVLQSALVLLIVGLTAFSMFRFIGDPIDNMLGQERTAMDIERLREQLGLDQSFPVQYYRFLQEAVQGNFGVSY
RQGRPVAEILLERAPATLELAAVSGILAIAFGIAFGVFTAIRRNGFTANFIMSASLIGVSLPTFLIGILLIYIFSVELGW
LPSFGRGEVVQIGNWSTGLLTSSGLKALILPSITLGLYQMTLIMRLVRSEMLEVLRQDYIRFARARGLRDRAIHFRHALK
NTMVPVITVIGLQLGAIIAFAIITETVFQWPGVGLLFINAVQFVDIPVMAAYLMLISVMFVAINLIVDILYFFIDPRLRV
DRAGGH

Sequences:

>Translated_326_residues
MLAFIIRRVLQSALVLLIVGLTAFSMFRFIGDPIDNMLGQERTAMDIERLREQLGLDQSFPVQYYRFLQEAVQGNFGVSY
RQGRPVAEILLERAPATLELAAVSGILAIAFGIAFGVFTAIRRNGFTANFIMSASLIGVSLPTFLIGILLIYIFSVELGW
LPSFGRGEVVQIGNWSTGLLTSSGLKALILPSITLGLYQMTLIMRLVRSEMLEVLRQDYIRFARARGLRDRAIHFRHALK
NTMVPVITVIGLQLGAIIAFAIITETVFQWPGVGLLFINAVQFVDIPVMAAYLMLISVMFVAINLIVDILYFFIDPRLRV
DRAGGH
>Mature_326_residues
MLAFIIRRVLQSALVLLIVGLTAFSMFRFIGDPIDNMLGQERTAMDIERLREQLGLDQSFPVQYYRFLQEAVQGNFGVSY
RQGRPVAEILLERAPATLELAAVSGILAIAFGIAFGVFTAIRRNGFTANFIMSASLIGVSLPTFLIGILLIYIFSVELGW
LPSFGRGEVVQIGNWSTGLLTSSGLKALILPSITLGLYQMTLIMRLVRSEMLEVLRQDYIRFARARGLRDRAIHFRHALK
NTMVPVITVIGLQLGAIIAFAIITETVFQWPGVGLLFINAVQFVDIPVMAAYLMLISVMFVAINLIVDILYFFIDPRLRV
DRAGGH

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=320, Percent_Identity=38.75, Blast_Score=231, Evalue=6e-62,
Organism=Escherichia coli, GI1789965, Length=343, Percent_Identity=36.4431486880466, Blast_Score=201, Evalue=4e-53,
Organism=Escherichia coli, GI1789888, Length=333, Percent_Identity=35.1351351351351, Blast_Score=189, Evalue=1e-49,
Organism=Escherichia coli, GI1787761, Length=330, Percent_Identity=38.4848484848485, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1787497, Length=323, Percent_Identity=32.5077399380805, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1787550, Length=260, Percent_Identity=35.3846153846154, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1788504, Length=297, Percent_Identity=23.9057239057239, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36290; Mature: 36290

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAFIIRRVLQSALVLLIVGLTAFSMFRFIGDPIDNMLGQERTAMDIERLREQLGLDQSF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHCCCCCC
PVQYYRFLQEAVQGNFGVSYRQGRPVAEILLERAPATLELAAVSGILAIAFGIAFGVFTA
CHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
IRRNGFTANFIMSASLIGVSLPTFLIGILLIYIFSVELGWLPSFGRGEVVQIGNWSTGLL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCC
TSSGLKALILPSITLGLYQMTLIMRLVRSEMLEVLRQDYIRFARARGLRDRAIHFRHALK
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
NTMVPVITVIGLQLGAIIAFAIITETVFQWPGVGLLFINAVQFVDIPVMAAYLMLISVMF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAINLIVDILYFFIDPRLRVDRAGGH
HHHHHHHHHHHHHHCCCCEECCCCCC
>Mature Secondary Structure
MLAFIIRRVLQSALVLLIVGLTAFSMFRFIGDPIDNMLGQERTAMDIERLREQLGLDQSF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHCCCCCC
PVQYYRFLQEAVQGNFGVSYRQGRPVAEILLERAPATLELAAVSGILAIAFGIAFGVFTA
CHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
IRRNGFTANFIMSASLIGVSLPTFLIGILLIYIFSVELGWLPSFGRGEVVQIGNWSTGLL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCC
TSSGLKALILPSITLGLYQMTLIMRLVRSEMLEVLRQDYIRFARARGLRDRAIHFRHALK
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
NTMVPVITVIGLQLGAIIAFAIITETVFQWPGVGLLFINAVQFVDIPVMAAYLMLISVMF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAINLIVDILYFFIDPRLRVDRAGGH
HHHHHHHHHHHHHHCCCCEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]