Click here to switch to the map view.

The map label for this gene is 110679464

Identifier: 110679464

GI number: 110679464

Start: 2088684

End: 2090255

Strand: Reverse

Name: 110679464

Synonym: RD1_2190

Alternate gene names: NA

Gene position: 2090255-2088684 (Counterclockwise)

Preceding gene: 110679465

Following gene: 110679463

Centisome position: 50.57

GC content: 62.09

Gene sequence:

>1572_bases
ATGACGGCACCTTTTGATCTCACGGACGACAGCGTTATTGTCGTGATCGGAACAGGCGCGGGCGGCGGCGTTCTGGCAAA
TGAACTGGCGCAAAAAGGCATCAGCGTTGTCGCGCTGGAAGCCGGCGGGCGCTACCTGCCCGAGGACTACGTCAACGACG
AATGGGAAAGCTTTGGGCAACTGGCGTGGCTGGACCCGCGCACGACATCGGGCGACTGGCGCGTGGCCAAAGATTTTTCC
GGCCTGCCTGCCTGGATCGTCAAGGCGGTGGGTGGTGCGACGACCCACTGGGCGGGGGCGAGCCTGCGCTTTCAGGAACA
CGAATGGAAGGCGGCGACCACCTATGGCAACGTGCAGGGCGCAAGCCTGCTGGATTGGCCGATAGATGCAGCGGAAATGG
ACCCATGGTACGCATTGGCTGAGGAAAAGCTGGGCGTGACACGCACGGGCGATCGACCGGGCCTGCCGGGCAACAACAAC
TACCTTGTGTTCGAGAAAGGCGCCAAGGCGCTGGGATACACCGAAGTCAGCACCGGGCGCATGGCGATCCAGTCCACCGA
TGGGGGCGAACGCACCGCCTGCCAACAGACAGGGTTTTGCTTTCAGGGCTGCAAATGGGGGTCGAAATGGTCGACCGCCT
ATACCGACATCCCGCAGGGTGAAGCGACCGGCAACCTCGAAGTGCGCGAACGGGCCCATGTGGCGCGCATCCTGCACGAT
GACGCCGGCAAAGTCTCGGGCGTTGAATACTTCGACGCGGACGGCAACCTGCAGCTGCAAAAGGCGCGCGCCGTCTGTGT
GGCAGGCAATTCGTTCGAAAGCCCGCGCATGCTGTTGAATTCGGCGACATCCATGTTCCCGGATGGGCTGGCCAATTCCT
CCGGTCAGGTGGGGCGCAATTACATGCGTCACATGACAGGGTCGGTTTATGCCACCTTTGATCAGCCGGTCAGGATGTGG
CGCGGCACGACCATGGCAGGCATCATTCAGGACGAGGCCCGCCATGACCCCAGCCGTGGTTTCGTCGGCGGATATGAACT
TGAGACGCTCGCGCTCGGCCTGCCGTTCATGGCCGCCTTCCTTGATCCCGGCGCATGGGGCCGCGAGTTCACTTCCGCGC
TGGATGCCTATGAGAACATGGCGGGCATGTGGATTGTGGGCGAAGACATGCCGCAGGAAACCAACCGCGTGACACTCAAC
CACGACGTCACGGATCAATACGGCCTGCCGGTGGCAAATGTGCACTTTGATGACCACCCCAATGATATCGCGATGCGCAA
TCACGCCTATCAGCAGGGGCAGGCCGTCTATGATGCGGTCGGGGCCACGCGCACCTTCCCGACGCCGCCATATCCGTCAA
CGCATAACCTTGGCACCAACCGGATGTCGGAAAATGCCCGCGACGGGGTGGTGAACAAATGGGGTCAGACCCATGATATC
CCGAACCTGTTCATCTCCGATGGGTCGCAGTTCACGACGGGGGCGGCCGAAAACCCCACGCTGACCATCGTGGCGCTGGC
CATCCGGCAGGCCGATCACATGGCGCGCGAGATGTCCGCCGGAAACCTGTAA

Upstream 100 bases:

>100_bases
CTGGCCGATCTTTGGCTACGAGGGCTCTTCTTATGAATTCGGTGGTTATATCGACCGCGGATTCAATGACATCAACTGGC
TATAAGGGAGACTAGGCACC

Downstream 100 bases:

>100_bases
CACCACATCGCCGCATCTTTTGGTGCGGCGATATCGCCCCTGATCTGATCCCCCCGCTATCCGGCGTTTTTGATCTGGCA
AAGCCCTAGGATATGCGGCT

Product: oxidoreductase, putative

Products: NA

Alternate protein names: GA 2-DH dehydrogenase subunit; GADH dehydrogenase subunit [H]

Number of amino acids: Translated: 523; Mature: 522

Protein sequence:

>523_residues
MTAPFDLTDDSVIVVIGTGAGGGVLANELAQKGISVVALEAGGRYLPEDYVNDEWESFGQLAWLDPRTTSGDWRVAKDFS
GLPAWIVKAVGGATTHWAGASLRFQEHEWKAATTYGNVQGASLLDWPIDAAEMDPWYALAEEKLGVTRTGDRPGLPGNNN
YLVFEKGAKALGYTEVSTGRMAIQSTDGGERTACQQTGFCFQGCKWGSKWSTAYTDIPQGEATGNLEVRERAHVARILHD
DAGKVSGVEYFDADGNLQLQKARAVCVAGNSFESPRMLLNSATSMFPDGLANSSGQVGRNYMRHMTGSVYATFDQPVRMW
RGTTMAGIIQDEARHDPSRGFVGGYELETLALGLPFMAAFLDPGAWGREFTSALDAYENMAGMWIVGEDMPQETNRVTLN
HDVTDQYGLPVANVHFDDHPNDIAMRNHAYQQGQAVYDAVGATRTFPTPPYPSTHNLGTNRMSENARDGVVNKWGQTHDI
PNLFISDGSQFTTGAAENPTLTIVALAIRQADHMAREMSAGNL

Sequences:

>Translated_523_residues
MTAPFDLTDDSVIVVIGTGAGGGVLANELAQKGISVVALEAGGRYLPEDYVNDEWESFGQLAWLDPRTTSGDWRVAKDFS
GLPAWIVKAVGGATTHWAGASLRFQEHEWKAATTYGNVQGASLLDWPIDAAEMDPWYALAEEKLGVTRTGDRPGLPGNNN
YLVFEKGAKALGYTEVSTGRMAIQSTDGGERTACQQTGFCFQGCKWGSKWSTAYTDIPQGEATGNLEVRERAHVARILHD
DAGKVSGVEYFDADGNLQLQKARAVCVAGNSFESPRMLLNSATSMFPDGLANSSGQVGRNYMRHMTGSVYATFDQPVRMW
RGTTMAGIIQDEARHDPSRGFVGGYELETLALGLPFMAAFLDPGAWGREFTSALDAYENMAGMWIVGEDMPQETNRVTLN
HDVTDQYGLPVANVHFDDHPNDIAMRNHAYQQGQAVYDAVGATRTFPTPPYPSTHNLGTNRMSENARDGVVNKWGQTHDI
PNLFISDGSQFTTGAAENPTLTIVALAIRQADHMAREMSAGNL
>Mature_522_residues
TAPFDLTDDSVIVVIGTGAGGGVLANELAQKGISVVALEAGGRYLPEDYVNDEWESFGQLAWLDPRTTSGDWRVAKDFSG
LPAWIVKAVGGATTHWAGASLRFQEHEWKAATTYGNVQGASLLDWPIDAAEMDPWYALAEEKLGVTRTGDRPGLPGNNNY
LVFEKGAKALGYTEVSTGRMAIQSTDGGERTACQQTGFCFQGCKWGSKWSTAYTDIPQGEATGNLEVRERAHVARILHDD
AGKVSGVEYFDADGNLQLQKARAVCVAGNSFESPRMLLNSATSMFPDGLANSSGQVGRNYMRHMTGSVYATFDQPVRMWR
GTTMAGIIQDEARHDPSRGFVGGYELETLALGLPFMAAFLDPGAWGREFTSALDAYENMAGMWIVGEDMPQETNRVTLNH
DVTDQYGLPVANVHFDDHPNDIAMRNHAYQQGQAVYDAVGATRTFPTPPYPSTHNLGTNRMSENARDGVVNKWGQTHDIP
NLFISDGSQFTTGAAENPTLTIVALAIRQADHMAREMSAGNL

Specific function: Part of the heterotrimer that catalyzes the conversion of D-gluconate to 2-dehydro-D-gluconate. This subunit functions as the dehydrogenase [H]

COG id: COG2303

COG function: function code E; Choline dehydrogenase and related flavoproteins

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GMC oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000172
- InterPro:   IPR007867 [H]

Pfam domain/function: PF05199 GMC_oxred_C; PF00732 GMC_oxred_N [H]

EC number: =1.1.99.3 [H]

Molecular weight: Translated: 56767; Mature: 56635

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPFDLTDDSVIVVIGTGAGGGVLANELAQKGISVVALEAGGRYLPEDYVNDEWESFGQ
CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHCCCCHHHCCC
LAWLDPRTTSGDWRVAKDFSGLPAWIVKAVGGATTHWAGASLRFQEHEWKAATTYGNVQG
EEEECCCCCCCCCEEECCCCCCHHHHHHHHCCCCEECCCCEEEEECCCCEEEEECCCCCC
ASLLDWPIDAAEMDPWYALAEEKLGVTRTGDRPGLPGNNNYLVFEKGAKALGYTEVSTGR
CEEECCCCCHHHCCCHHHHHHHCCCCEECCCCCCCCCCCCEEEEECCCCCCCEEEECCCE
MAIQSTDGGERTACQQTGFCFQGCKWGSKWSTAYTDIPQGEATGNLEVRERAHVARILHD
EEEEECCCCCHHHHHHCCCCHHCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHC
DAGKVSGVEYFDADGNLQLQKARAVCVAGNSFESPRMLLNSATSMFPDGLANSSGQVGRN
CCCCCCCCEEECCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHH
YMRHMTGSVYATFDQPVRMWRGTTMAGIIQDEARHDPSRGFVGGYELETLALGLPFMAAF
HHHHHCCCEEEECCHHHHHHCCCCEEEEECHHHCCCCCCCCCCCEEHHHHHHHHHHHHHH
LDPGAWGREFTSALDAYENMAGMWIVGEDMPQETNRVTLNHDVTDQYGLPVANVHFDDHP
CCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEECCCCHHHCCCEEEEECCCCC
NDIAMRNHAYQQGQAVYDAVGATRTFPTPPYPSTHNLGTNRMSENARDGVVNKWGQTHDI
CCHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCHHCCHHHCCCCCCCC
PNLFISDGSQFTTGAAENPTLTIVALAIRQADHMAREMSAGNL
CEEEECCCCEEECCCCCCCCEEEEEHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TAPFDLTDDSVIVVIGTGAGGGVLANELAQKGISVVALEAGGRYLPEDYVNDEWESFGQ
CCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHCCCCHHHCCC
LAWLDPRTTSGDWRVAKDFSGLPAWIVKAVGGATTHWAGASLRFQEHEWKAATTYGNVQG
EEEECCCCCCCCCEEECCCCCCHHHHHHHHCCCCEECCCCEEEEECCCCEEEEECCCCCC
ASLLDWPIDAAEMDPWYALAEEKLGVTRTGDRPGLPGNNNYLVFEKGAKALGYTEVSTGR
CEEECCCCCHHHCCCHHHHHHHCCCCEECCCCCCCCCCCCEEEEECCCCCCCEEEECCCE
MAIQSTDGGERTACQQTGFCFQGCKWGSKWSTAYTDIPQGEATGNLEVRERAHVARILHD
EEEEECCCCCHHHHHHCCCCHHCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHC
DAGKVSGVEYFDADGNLQLQKARAVCVAGNSFESPRMLLNSATSMFPDGLANSSGQVGRN
CCCCCCCCEEECCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHH
YMRHMTGSVYATFDQPVRMWRGTTMAGIIQDEARHDPSRGFVGGYELETLALGLPFMAAF
HHHHHCCCEEEECCHHHHHHCCCCEEEEECHHHCCCCCCCCCCCEEHHHHHHHHHHHHHH
LDPGAWGREFTSALDAYENMAGMWIVGEDMPQETNRVTLNHDVTDQYGLPVANVHFDDHP
CCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEECCCCHHHCCCEEEEECCCCC
NDIAMRNHAYQQGQAVYDAVGATRTFPTPPYPSTHNLGTNRMSENARDGVVNKWGQTHDI
CCHHHHHHHHHHCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHCCCHHCCHHHCCCCCCCC
PNLFISDGSQFTTGAAENPTLTIVALAIRQADHMAREMSAGNL
CEEEECCCCEEECCCCCCCCEEEEEHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9352901 [H]