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The map label for this gene is 110679450

Identifier: 110679450

GI number: 110679450

Start: 2074001

End: 2074558

Strand: Reverse

Name: 110679450

Synonym: RD1_2176

Alternate gene names: NA

Gene position: 2074558-2074001 (Counterclockwise)

Preceding gene: 110679451

Following gene: 110679449

Centisome position: 50.19

GC content: 55.56

Gene sequence:

>558_bases
ATGCGCGGATACATACGCGGCGTCGATGCGCTCAACTATCGCCTTGGGCGCGTGGTGATGTATGGAATTTTCGTGCTGAT
GGCGATCCTGCTGTGGTCCTCGATCAGCAAGACGTTCTTTCTGCCCACGCTCTGGACGCTGGAAATGGCGCAATTCGTGA
TGGTCGGTTATTACATCCTTGGCGGGCCCTATTCGATCCAACTGGGGGCGAATGTGCGGATGGATCTGCTTTATGGCGAA
TGGTCGATAAGGCGCAAGGCGTGGTTTGACCTGACTACCGTGTGTTTCCTGATCTTTTACCTCTGCGTGTTGCTTTATGG
CGCGGTCAGTTCCACCGCCTATTCGCTGGGCTATTGGAAGGACGCGCCGTTTTCCTATCTGTTTGGCGTTTTGATCGGCA
CCGAGGAAGTCGGCCGGATGGAGCGATCATCGTCCGCGTGGCGTCCCCTTATGTGGCCGATCAAGGCCGTGATGATCGTC
GGGTTTTTCCTGATGCTGCTGCAGTGCATTTCCGAGCTGTTCAAGGACGTGCTGCGTCTGAAAGGTCACACCATCTGA

Upstream 100 bases:

>100_bases
TGATTGAAACAGAGGACACGCAGACCGCCATGGCGACGCTGATGTCGCGTTGGGTGGCGGAGGCTGTCGCGCACACCAAG
GGCCTTTCATGCAAGGTCTG

Downstream 100 bases:

>100_bases
TGCCCTATGAACTGATCGCCACGCTGATGTTCTCGACCATGATGCTGATGCTGCTGACGGGACAGCGGGTCTTTGGCGCG
ATTGGTTTTGTGGCTGTGGT

Product: hypothetical protein

Products: NA

Alternate protein names: TRAP Transporter DctQ Family Protein; TRAP Dicarboxylate Transporter Subunit DctQ; Trap Transporter Membrane Protein Dctq Family; Tripartite ATP-Independent Periplasmic; TRAP-Type Mannitol/Chloroaromatic Compound Transport System; Trap-T Family Transporter Dctq Subunit

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MRGYIRGVDALNYRLGRVVMYGIFVLMAILLWSSISKTFFLPTLWTLEMAQFVMVGYYILGGPYSIQLGANVRMDLLYGE
WSIRRKAWFDLTTVCFLIFYLCVLLYGAVSSTAYSLGYWKDAPFSYLFGVLIGTEEVGRMERSSSAWRPLMWPIKAVMIV
GFFLMLLQCISELFKDVLRLKGHTI

Sequences:

>Translated_185_residues
MRGYIRGVDALNYRLGRVVMYGIFVLMAILLWSSISKTFFLPTLWTLEMAQFVMVGYYILGGPYSIQLGANVRMDLLYGE
WSIRRKAWFDLTTVCFLIFYLCVLLYGAVSSTAYSLGYWKDAPFSYLFGVLIGTEEVGRMERSSSAWRPLMWPIKAVMIV
GFFLMLLQCISELFKDVLRLKGHTI
>Mature_185_residues
MRGYIRGVDALNYRLGRVVMYGIFVLMAILLWSSISKTFFLPTLWTLEMAQFVMVGYYILGGPYSIQLGANVRMDLLYGE
WSIRRKAWFDLTTVCFLIFYLCVLLYGAVSSTAYSLGYWKDAPFSYLFGVLIGTEEVGRMERSSSAWRPLMWPIKAVMIV
GFFLMLLQCISELFKDVLRLKGHTI

Specific function: Unknown

COG id: COG4665

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, small permease component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21318; Mature: 21318

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGYIRGVDALNYRLGRVVMYGIFVLMAILLWSSISKTFFLPTLWTLEMAQFVMVGYYIL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGPYSIQLGANVRMDLLYGEWSIRRKAWFDLTTVCFLIFYLCVLLYGAVSSTAYSLGYWK
CCCEEEEECCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DAPFSYLFGVLIGTEEVGRMERSSSAWRPLMWPIKAVMIVGFFLMLLQCISELFKDVLRL
CCHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGHTI
CCCCC
>Mature Secondary Structure
MRGYIRGVDALNYRLGRVVMYGIFVLMAILLWSSISKTFFLPTLWTLEMAQFVMVGYYIL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGPYSIQLGANVRMDLLYGEWSIRRKAWFDLTTVCFLIFYLCVLLYGAVSSTAYSLGYWK
CCCEEEEECCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DAPFSYLFGVLIGTEEVGRMERSSSAWRPLMWPIKAVMIVGFFLMLLQCISELFKDVLRL
CCHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGHTI
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA